Wall clock time and date at job start Sun Mar 29 2020 22:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48510 * 109.46894 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47285 * 299.99557 * 3 2 1 6 6 H 1.48493 * 109.47173 * 60.00435 * 3 2 1 7 7 C 1.37872 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99954 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46775 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46999 * 179.97438 * 11 10 9 13 13 O 1.42895 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.35951 * 116.99758 * 179.97438 * 13 12 11 15 15 C 1.38708 * 120.03040 * 0.28885 * 14 13 12 16 16 C 1.38147 * 119.96935 * 180.25012 * 15 14 13 17 17 C 1.38455 * 120.02958 * 359.46222 * 16 15 14 18 18 F 1.35101 * 119.97206 * 180.29906 * 17 16 15 19 19 C 1.38452 * 120.06193 * 0.28172 * 17 16 15 20 20 C 1.38156 * 120.03063 * 359.97438 * 19 17 16 21 21 H 0.96998 * 119.99723 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.46753 * 60.00118 * 9 7 2 23 23 H 1.08995 * 109.46913 * 300.00017 * 9 7 2 24 24 H 1.08997 * 109.46801 * 59.99894 * 10 9 7 25 25 H 1.08995 * 109.47343 * 299.99881 * 10 9 7 26 26 H 1.08997 * 109.47586 * 60.00322 * 11 10 9 27 27 H 1.09003 * 109.47359 * 299.99462 * 11 10 9 28 28 H 1.09005 * 109.46539 * 60.00054 * 12 11 10 29 29 H 1.08995 * 109.46786 * 300.00191 * 12 11 10 30 30 H 1.07998 * 120.01328 * 0.02562 * 15 14 13 31 31 H 1.08002 * 119.98838 * 179.74746 * 16 15 14 32 32 H 1.07997 * 119.98751 * 179.97438 * 19 17 16 33 33 H 1.07999 * 120.02057 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9870 -0.0025 12 6 2.4746 -6.1500 -0.0044 13 8 1.7600 -7.3875 -0.0044 14 6 2.5005 -8.5277 -0.0066 15 6 3.8857 -8.4559 -0.0026 16 6 4.6369 -9.6152 -0.0100 17 6 4.0077 -10.8485 -0.0102 18 9 4.7434 -11.9816 -0.0114 19 6 2.6251 -10.9218 -0.0088 20 6 1.8714 -9.7639 -0.0067 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 2.8726 -3.6047 0.8877 25 1 2.8713 -3.6040 -0.8922 26 1 0.8533 -5.0442 -0.8922 27 1 0.8541 -5.0455 0.8878 28 1 3.1019 -6.0931 0.8852 29 1 3.1004 -6.0914 -0.8948 30 1 4.3767 -7.4940 0.0026 31 1 5.7155 -9.5596 -0.0111 32 1 2.1355 -11.8844 -0.0093 33 1 0.7929 -9.8212 -0.0052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095733800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:57 Heat of formation + Delta-G solvation = -100.601160 kcal Electronic energy + Delta-G solvation = -15509.070392 eV Core-core repulsion = 12641.045163 eV Total energy + Delta-G solvation = -2868.025229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.81902 -41.08303 -38.39893 -36.45639 -34.40803 -32.27123 -31.12604 -29.84503 -26.89837 -24.58442 -23.58451 -22.64209 -21.78846 -19.23869 -18.45001 -18.31961 -17.54066 -17.31239 -16.51998 -16.51303 -15.70119 -15.54693 -15.33073 -14.61487 -14.46246 -14.12730 -13.80844 -13.71980 -13.57837 -12.96385 -12.95600 -12.59345 -12.33714 -12.29680 -11.74193 -11.73012 -11.36703 -11.33938 -11.11547 -10.55699 -10.18900 -9.11405 -8.19917 -6.31115 0.16072 0.19641 1.41047 1.41173 1.54480 2.15516 2.42147 2.56615 3.13615 3.32145 3.69291 3.81680 3.98776 4.01331 4.13694 4.31797 4.34642 4.46588 4.54926 4.73795 4.80111 4.91681 5.11621 5.12028 5.13708 5.23662 5.25081 5.28899 5.53895 5.72215 5.75642 5.86700 6.24549 6.38448 6.87061 7.38558 8.92293 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.072362 B = 0.003187 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.851052 B = 8784.197030 C = 9139.995577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.110 4.110 12 C 0.065 3.935 13 O -0.328 6.328 14 C 0.108 3.892 15 C -0.187 4.187 16 C -0.112 4.112 17 C 0.038 3.962 18 F -0.149 7.149 19 C -0.109 4.109 20 C -0.134 4.134 21 H 0.263 0.737 22 H -0.009 1.009 23 H -0.009 1.009 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.044 -20.411 -0.013 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.148 4.148 12 C -0.009 4.009 13 O -0.242 6.242 14 C 0.062 3.938 15 C -0.206 4.206 16 C -0.131 4.131 17 C 0.018 3.982 18 F -0.127 7.127 19 C -0.128 4.128 20 C -0.152 4.152 21 H 0.072 0.928 22 H 0.009 0.991 23 H 0.010 0.990 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.181 0.819 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.727 -20.312 -0.012 21.732 hybrid contribution 0.265 0.941 -0.002 0.978 sum 7.992 -19.371 -0.014 20.955 Atomic orbital electron populations 1.70113 1.07880 1.27704 1.51872 1.26019 0.95775 1.03511 0.94817 0.85385 0.79171 0.78703 0.77703 1.18343 1.20487 1.20477 1.21770 0.93702 0.92340 1.50229 0.91851 1.19034 0.94561 0.93173 0.94892 1.21348 0.98068 0.92349 1.01413 1.21490 0.98237 0.92422 1.02654 1.22948 0.95058 0.80277 1.02629 1.86080 1.36582 1.13247 1.88312 1.19401 0.90694 0.87081 0.96639 1.21373 0.92407 1.00317 1.06453 1.21169 1.01917 0.90179 0.99830 1.17797 0.89881 0.82247 1.08237 1.91469 1.77275 1.49465 1.94539 1.21177 0.91531 1.00125 0.99940 1.20537 1.01703 0.88610 1.04388 0.92806 0.99051 0.99040 0.92157 0.92167 0.91981 0.91972 0.90554 0.90550 0.83088 0.82679 0.81922 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.07 13.29 21.45 0.28 -56.78 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.07 4.97 29.85 0.15 1.21 16 10 C -0.09 -3.63 5.15 30.59 0.16 -3.47 16 11 C -0.11 -3.56 5.58 30.60 0.17 -3.39 16 12 C 0.07 1.65 4.74 71.98 0.34 2.00 16 13 O -0.33 -8.78 10.14 -92.99 -0.94 -9.72 16 14 C 0.11 2.47 6.69 22.50 0.15 2.62 16 15 C -0.19 -3.72 9.04 22.36 0.20 -3.51 16 16 C -0.11 -2.05 10.02 22.30 0.22 -1.82 16 17 C 0.04 0.73 7.30 22.37 0.16 0.89 16 18 F -0.15 -3.05 17.27 44.97 0.78 -2.27 16 19 C -0.11 -1.90 10.02 22.30 0.22 -1.68 16 20 C -0.13 -2.63 9.99 22.36 0.22 -2.41 16 21 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 22 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 24 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 1.71 7.65 -2.38 -0.02 1.69 16 29 H 0.08 1.71 7.67 -2.39 -0.02 1.70 16 30 H 0.15 2.57 6.30 -2.91 -0.02 2.55 16 31 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -64.64 290.31 5.93 -58.71 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 1.09 Total: 3.77 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 2.70 Total: -39.62 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.28 Total: -56.78 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.94 Total: -9.72 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.64 5.93 -58.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095733800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.892 kcal (2) G-P(sol) polarization free energy of solvation -64.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds