Wall clock time and date at job start Sun Mar 29 2020 21:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46506 * 109.47322 * 2 1 4 4 C 1.46496 * 119.99869 * 274.97686 * 3 2 1 5 5 C 1.50703 * 109.47027 * 264.65239 * 4 3 2 6 6 H 1.08004 * 119.99600 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00155 * 180.02562 * 5 4 3 8 8 N 1.31505 * 120.00132 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99970 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47081 * 89.99638 * 9 7 5 11 11 H 1.48502 * 109.46911 * 210.00131 * 9 7 5 12 12 H 1.48507 * 109.46933 * 329.99955 * 9 7 5 13 13 C 1.34778 * 120.00006 * 94.96682 * 3 2 1 14 14 O 1.21491 * 120.00035 * 354.51966 * 13 3 2 15 15 C 1.48331 * 119.99887 * 174.23982 * 13 3 2 16 16 C 1.42273 * 126.93970 * 184.89872 * 15 13 3 17 17 C 1.35313 * 103.91962 * 180.02562 * 16 15 13 18 18 C 1.50703 * 126.66216 * 179.97438 * 17 16 15 19 19 O 1.34013 * 106.67338 * 359.97438 * 17 16 15 20 20 N 1.20905 * 111.84222 * 359.71005 * 19 17 16 21 21 H 1.08998 * 109.47334 * 300.00303 * 1 2 3 22 22 H 1.09004 * 109.47430 * 60.00357 * 1 2 3 23 23 H 1.09001 * 109.47176 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47485 * 240.00222 * 2 1 3 25 25 H 1.09004 * 109.47430 * 119.99643 * 2 1 3 26 26 H 1.09006 * 109.47418 * 24.64956 * 4 3 2 27 27 H 1.09001 * 109.47421 * 144.65495 * 4 3 2 28 28 H 0.97006 * 120.00066 * 180.02562 * 8 7 5 29 29 H 1.07990 * 128.03703 * 0.02562 * 16 15 13 30 30 H 1.09003 * 109.47125 * 89.99893 * 18 17 16 31 31 H 1.09003 * 109.47251 * 209.99603 * 18 17 16 32 32 H 1.09000 * 109.47206 * 330.00248 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1587 2.1085 -1.2639 5 6 3.5792 1.9942 -1.7541 6 1 4.3049 1.4361 -1.1811 7 6 3.9527 2.6031 -2.9334 8 7 3.0692 3.2832 -3.6308 9 14 5.7137 2.4621 -3.5406 10 1 5.8438 1.2634 -4.4074 11 1 6.0678 3.6765 -4.3184 12 1 6.6292 2.3342 -2.3783 13 6 2.3382 1.9829 1.1628 14 8 2.1284 1.4172 2.2173 15 6 2.9522 3.3332 1.1549 16 6 3.4342 4.0599 2.2790 17 6 3.8896 5.2178 1.7472 18 6 4.5130 6.3678 2.4954 19 8 3.6784 5.1433 0.4259 20 7 3.1655 4.0948 0.1107 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.4831 1.6821 -2.0055 27 1 1.9114 3.1586 -1.1084 28 1 3.3319 3.7112 -4.4607 29 1 3.4362 3.7576 3.3157 30 1 5.5919 6.2227 2.5512 31 1 4.2984 7.3002 1.9730 32 1 4.0999 6.4124 3.5030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103207572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:22 Heat of formation + Delta-G solvation = 10.643408 kcal Electronic energy + Delta-G solvation = -17333.420314 eV Core-core repulsion = 14490.138973 eV Total energy + Delta-G solvation = -2843.281341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.91698 -40.76277 -37.11188 -35.07232 -34.67866 -34.15632 -31.88254 -29.05097 -28.52045 -26.16446 -25.04693 -23.79403 -22.87037 -19.97314 -18.86764 -18.46352 -18.23566 -17.72159 -17.08288 -16.40162 -15.95696 -15.28050 -14.72665 -14.48760 -14.35108 -14.32239 -13.88101 -13.77884 -13.48252 -13.18458 -13.00622 -12.73841 -12.67740 -12.23817 -11.93710 -11.79406 -11.68374 -11.32527 -11.23880 -10.56709 -10.19296 -9.61099 -8.17253 -6.27834 0.37175 0.82117 1.36103 1.37330 1.46629 1.99727 2.20954 2.36989 2.42671 3.13496 3.16635 3.64072 4.05800 4.13796 4.29372 4.32010 4.46153 4.47715 4.72647 4.82186 4.90311 4.92924 4.95000 4.99412 5.19260 5.30983 5.32420 5.64502 5.76139 6.07407 6.36072 6.75559 7.03131 7.38918 7.41828 8.90389 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.012680 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.335223 B = 2207.749066 C = 3632.149929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.106 3.894 3 N -0.587 5.587 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.038 0.962 7 C 0.031 3.969 8 N -0.914 5.914 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.587 3.413 14 O -0.576 6.576 15 C -0.067 4.067 16 C -0.199 4.199 17 C -0.040 4.040 18 C -0.066 4.066 19 O 0.112 5.888 20 N -0.301 5.301 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.095 0.905 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.021 0.979 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.194 0.806 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 3.829 9.716 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 N -0.317 5.317 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.056 0.944 7 C -0.170 4.170 8 N -0.553 5.553 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.202 1.202 12 H -0.204 1.204 13 C 0.375 3.625 14 O -0.458 6.458 15 C -0.224 4.224 16 C -0.222 4.222 17 C -0.103 4.103 18 C -0.123 4.123 19 O 0.032 5.968 20 N 0.002 4.998 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.114 0.886 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.211 0.789 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.682 3.389 8.740 9.399 hybrid contribution 0.818 -0.348 0.013 0.889 sum 1.500 3.041 8.752 9.386 Atomic orbital electron populations 1.22018 0.94246 1.03473 1.01291 1.21578 0.95681 0.81379 1.02929 1.48285 1.61267 1.14778 1.07383 1.19344 0.96347 0.92294 0.79266 1.21299 0.95503 1.32920 1.06732 0.94390 1.25468 1.00723 0.94349 0.96451 1.70003 1.35532 1.34169 1.15609 0.85707 0.80627 0.78011 0.78186 1.19696 1.20197 1.20398 1.17236 0.77761 0.83727 0.83813 1.90626 1.57707 1.66115 1.31331 1.23574 1.08434 0.98909 0.91516 1.22582 1.04970 0.93714 1.00935 1.25398 1.01713 1.00118 0.83060 1.20590 1.01263 0.91353 0.99066 1.84884 1.56448 1.30042 1.25386 1.74975 1.09384 0.93573 1.21894 0.93601 0.93138 0.88618 0.90053 0.90410 0.96098 0.94077 0.92524 0.78918 0.87886 0.88416 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 10.24 71.98 0.74 -4.18 16 2 C 0.11 4.09 6.12 86.37 0.53 4.62 16 3 N -0.59 -27.49 2.47 -829.01 -2.05 -29.54 16 4 C 0.25 13.07 4.78 85.63 0.41 13.48 16 5 C -0.53 -29.44 8.06 25.60 0.21 -29.23 16 6 H 0.04 2.20 7.81 -2.91 -0.02 2.18 16 7 C 0.03 1.70 5.46 84.66 0.46 2.16 16 8 N -0.91 -52.85 13.29 21.44 0.28 -52.57 16 9 Si 0.95 44.22 29.54 68.60 2.03 46.25 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.59 27.72 7.65 86.93 0.66 28.38 16 14 O -0.58 -27.47 16.51 -3.69 -0.06 -27.53 16 15 C -0.07 -2.96 6.79 42.96 0.29 -2.67 16 16 C -0.20 -6.74 10.93 22.60 0.25 -6.49 16 17 C -0.04 -1.18 7.47 25.01 0.19 -0.99 16 18 C -0.07 -1.00 10.45 71.24 0.74 -0.26 16 19 O 0.11 4.38 11.18 71.91 0.80 5.19 16 20 N -0.30 -14.10 7.87 -49.51 -0.39 -14.49 16 21 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.08 3.05 8.11 -2.39 -0.02 3.03 16 25 H 0.08 2.92 7.36 -2.38 -0.02 2.90 16 26 H 0.02 1.15 8.03 -2.38 -0.02 1.13 16 27 H 0.04 2.34 5.70 -2.39 -0.01 2.32 16 28 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 29 H 0.19 5.38 8.06 -2.92 -0.02 5.36 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -69.78 282.33 6.21 -63.57 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.12 Total: 4.29 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 4.48 Total: 4.83 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -2.15 Total: -96.59 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.74 Total: -22.35 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -69.78 6.21 -63.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103207572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.213 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds