Wall clock time and date at job start Sun Mar 29 2020 22:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47273 * 2 1 4 4 C 1.46496 * 119.99800 * 274.97521 * 3 2 1 5 5 C 1.50703 * 109.47081 * 264.62110 * 4 3 2 6 6 H 1.08000 * 120.00171 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00111 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99967 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00020 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47071 * 60.00422 * 9 7 5 11 11 H 1.48498 * 109.47022 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47404 * 300.00358 * 9 7 5 13 13 C 1.34775 * 119.99835 * 94.97303 * 3 2 1 14 14 O 1.21554 * 120.00132 * 354.49497 * 13 3 2 15 15 C 1.47799 * 119.99644 * 174.76701 * 13 3 2 16 16 C 1.40930 * 127.23752 * 184.61270 * 15 13 3 17 17 N 1.31132 * 105.77392 * 179.97438 * 16 15 13 18 18 N 1.28515 * 109.06317 * 0.02562 * 17 16 15 19 19 C 1.46499 * 124.44212 * 180.02562 * 18 17 16 20 20 N 1.28592 * 111.10948 * 359.71747 * 18 17 16 21 21 H 1.08997 * 109.47498 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46757 * 300.00218 * 1 2 3 23 23 H 1.08998 * 109.47193 * 59.99661 * 1 2 3 24 24 H 1.09004 * 109.46757 * 239.99782 * 2 1 3 25 25 H 1.08998 * 109.47193 * 120.00339 * 2 1 3 26 26 H 1.09002 * 109.47473 * 24.62148 * 4 3 2 27 27 H 1.08998 * 109.47522 * 144.62061 * 4 3 2 28 28 H 0.97005 * 120.00106 * 179.97438 * 8 7 5 29 29 H 1.07999 * 127.11053 * 359.97438 * 16 15 13 30 30 H 1.08993 * 109.47497 * 90.02025 * 19 18 17 31 31 H 1.09009 * 109.46711 * 210.01709 * 19 18 17 32 32 H 1.08993 * 109.47312 * 330.01402 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1588 2.1084 -1.2639 5 6 3.5795 1.9948 -1.7537 6 1 4.3051 1.4364 -1.1809 7 6 3.9527 2.6029 -2.9335 8 7 3.0690 3.2825 -3.6312 9 14 5.7135 2.4615 -3.5409 10 1 6.0508 1.0308 -3.7524 11 1 5.8559 3.1988 -4.8220 12 1 6.6338 3.0429 -2.5308 13 6 2.3384 1.9828 1.1628 14 8 2.1282 1.4169 2.2179 15 6 2.9394 3.3330 1.1553 16 6 3.4127 4.0620 2.2647 17 7 3.8554 5.1981 1.7821 18 7 3.6886 5.2064 0.5079 19 6 4.0673 6.3163 -0.3702 20 7 3.1515 4.1100 0.1040 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.4836 1.6817 -2.0057 27 1 1.9109 3.1584 -1.1085 28 1 3.3317 3.7107 -4.4611 29 1 3.4110 3.7496 3.2985 30 1 5.0923 6.1751 -0.7128 31 1 3.3974 6.3443 -1.2297 32 1 3.9936 7.2551 0.1786 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283984195.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:29 Heat of formation + Delta-G solvation = 64.220014 kcal Electronic energy + Delta-G solvation = -17486.552034 eV Core-core repulsion = 14677.886700 eV Total energy + Delta-G solvation = -2808.665334 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.45814 -40.54536 -36.96581 -34.75747 -34.51704 -33.59888 -31.78200 -29.05668 -28.60946 -25.54907 -24.92858 -23.25249 -22.80784 -20.32596 -18.63742 -18.18120 -17.82332 -17.67535 -16.97460 -16.34386 -15.82869 -15.59532 -15.03568 -14.40818 -14.27454 -13.84400 -13.62173 -13.58111 -13.31174 -13.10664 -12.79645 -12.71324 -12.60981 -12.13089 -11.82506 -11.68555 -11.33598 -11.27490 -11.09147 -10.45558 -10.30643 -9.45048 -8.08709 -6.16942 0.52047 1.04017 1.38234 1.40904 1.46423 1.47768 2.23670 2.40183 2.46926 3.11479 3.22796 3.81025 4.12989 4.26647 4.31101 4.37419 4.41867 4.57638 4.58382 4.83104 4.86655 5.00316 5.06129 5.12387 5.29392 5.40841 5.68922 5.87607 5.89834 6.19741 6.50502 6.87010 7.17159 7.37290 7.49103 8.98218 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.013160 C = 0.008299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.049699 B = 2127.107491 C = 3373.132101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.107 3.893 3 N -0.588 5.588 4 C 0.250 3.750 5 C -0.516 4.516 6 H 0.035 0.965 7 C 0.037 3.963 8 N -0.912 5.912 9 Si 0.938 3.062 10 H -0.277 1.277 11 H -0.277 1.277 12 H -0.282 1.282 13 C 0.600 3.400 14 O -0.579 6.579 15 C -0.078 4.078 16 C 0.025 3.975 17 N -0.306 5.306 18 N -0.154 5.154 19 C 0.098 3.902 20 N -0.204 5.204 21 H 0.092 0.908 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.019 0.981 27 H 0.050 0.950 28 H 0.264 0.736 29 H 0.226 0.774 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 3.075 4.842 5.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 N -0.317 5.317 4 C 0.129 3.871 5 C -0.556 4.556 6 H 0.053 0.947 7 C -0.163 4.163 8 N -0.552 5.552 9 Si 0.765 3.235 10 H -0.203 1.203 11 H -0.202 1.202 12 H -0.208 1.208 13 C 0.386 3.614 14 O -0.460 6.460 15 C -0.240 4.240 16 C -0.159 4.159 17 N -0.146 5.146 18 N -0.057 5.057 19 C -0.040 4.040 20 N -0.052 5.052 21 H 0.110 0.890 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.151 3.922 4.341 5.852 hybrid contribution 0.811 -0.728 -0.145 1.100 sum 0.661 3.194 4.195 5.314 Atomic orbital electron populations 1.22019 0.94456 1.03256 1.01333 1.21539 0.95498 0.81618 1.02813 1.48220 1.61399 1.14606 1.07476 1.19356 0.95917 0.92732 0.79104 1.21290 0.95648 1.32235 1.06377 0.94659 1.25295 0.99799 0.94792 0.96453 1.69994 1.35007 1.34556 1.15598 0.85939 0.81694 0.78242 0.77606 1.20276 1.20215 1.20816 1.16908 0.77461 0.83254 0.83761 1.90653 1.57779 1.66168 1.31363 1.23104 1.10889 0.98832 0.91165 1.25074 0.99701 0.89359 1.01744 1.73820 1.22026 1.23365 0.95346 1.48729 1.39752 1.13383 1.03879 1.22506 1.03399 0.84851 0.93260 1.75320 1.10093 0.94671 1.25126 0.88975 0.93542 0.93102 0.90236 0.90479 0.96315 0.93263 0.92649 0.75763 0.88573 0.87729 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 10.24 71.98 0.74 -3.98 16 2 C 0.11 3.96 6.12 86.38 0.53 4.49 16 3 N -0.59 -26.14 2.47 -829.63 -2.05 -28.19 16 4 C 0.25 12.38 4.78 85.63 0.41 12.79 16 5 C -0.52 -27.36 8.08 25.60 0.21 -27.15 16 6 H 0.04 1.96 7.81 -2.91 -0.02 1.93 16 7 C 0.04 1.92 5.46 84.65 0.46 2.39 16 8 N -0.91 -49.09 13.29 21.45 0.28 -48.80 16 9 Si 0.94 41.97 29.54 68.60 2.03 44.00 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 C 0.60 27.02 7.63 86.77 0.66 27.68 16 14 O -0.58 -26.45 16.51 -3.89 -0.06 -26.51 16 15 C -0.08 -3.37 6.79 42.24 0.29 -3.08 16 16 C 0.02 0.90 12.05 85.46 1.03 1.93 16 17 N -0.31 -10.76 12.00 -56.16 -0.67 -11.44 16 18 N -0.15 -5.62 4.35 -206.55 -0.90 -6.52 16 19 C 0.10 2.54 11.55 127.77 1.48 4.01 16 20 N -0.20 -8.95 7.88 -48.17 -0.38 -9.33 16 21 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.08 2.86 8.11 -2.39 -0.02 2.84 16 25 H 0.08 2.78 7.36 -2.39 -0.02 2.77 16 26 H 0.02 0.97 8.03 -2.39 -0.02 0.95 16 27 H 0.05 2.60 5.67 -2.39 -0.01 2.59 16 28 H 0.26 13.51 8.31 -92.70 -0.77 12.74 16 29 H 0.23 6.53 8.06 -2.91 -0.02 6.51 16 30 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.10 2.77 8.14 -2.38 -0.02 2.75 16 32 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -64.61 282.24 5.16 -59.44 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.12 Total: 8.27 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 5.80 Total: 19.08 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -3.72 Total: -104.28 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.06 Total: -26.51 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -64.61 5.16 -59.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283984195.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.665 kcal (2) G-P(sol) polarization free energy of solvation -64.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds