Wall clock time and date at job start Sun Mar 29 2020 22:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21593 * 120.00264 * 359.72086 * 14 13 3 16 16 C 1.47519 * 119.99665 * 179.72393 * 14 13 3 17 17 C 1.36597 * 125.77183 * 179.71279 * 16 14 13 18 18 N 1.34820 * 106.84331 * 179.89938 * 17 16 14 19 19 C 1.46497 * 126.59359 * 180.15062 * 18 17 16 20 20 N 1.40212 * 106.80530 * 0.35587 * 18 17 16 21 21 N 1.28761 * 108.36947 * 359.77681 * 20 18 17 22 22 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 23 23 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 24 24 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 26 26 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 27 27 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 28 28 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 29 29 H 1.07999 * 126.57979 * 0.03933 * 17 16 14 30 30 H 1.08996 * 109.46888 * 270.27098 * 19 18 17 31 31 H 1.08997 * 109.47430 * 30.27481 * 19 18 17 32 32 H 1.09002 * 109.47004 * 150.27219 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3394 2.6371 -0.4298 16 6 0.0492 3.3342 -2.6233 17 6 -1.1484 3.9439 -2.8680 18 7 -1.0933 4.4221 -4.1274 19 6 -2.1484 5.1567 -4.8296 20 7 0.1664 4.0769 -4.6372 21 7 0.8121 3.4375 -3.7250 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.8293 -0.0619 2.9495 28 1 2.2719 2.1232 -1.9977 29 1 -1.9792 4.0287 -2.1832 30 1 -2.7948 4.4523 -5.3530 31 1 -2.7375 5.7240 -4.1090 32 1 -1.6980 5.8403 -5.5492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288732380.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:18 Heat of formation + Delta-G solvation = 30.568445 kcal Electronic energy + Delta-G solvation = -16783.300757 eV Core-core repulsion = 13973.176181 eV Total energy + Delta-G solvation = -2810.124576 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.14849 -40.38751 -36.92041 -35.58641 -34.23965 -32.89035 -31.74432 -29.19360 -28.37431 -25.37817 -24.25546 -23.09447 -21.95019 -21.07258 -19.51059 -18.04789 -17.28716 -17.14649 -16.84878 -16.16638 -16.02890 -15.55728 -14.99276 -14.56349 -14.24014 -13.94195 -13.70747 -13.41844 -13.16068 -13.08189 -12.87658 -12.67054 -12.23006 -12.14626 -12.02770 -11.56330 -11.27499 -11.04606 -10.92537 -10.50967 -10.30021 -9.61217 -8.14385 -6.30893 0.20159 0.71343 1.24153 1.46304 1.46463 1.57614 2.35804 2.42833 2.59260 3.14884 3.31738 3.60325 3.97182 4.05200 4.41002 4.52985 4.55188 4.61017 4.70304 4.76817 4.85836 5.10666 5.28914 5.46630 5.51202 5.56948 5.62644 5.81631 5.92189 6.18490 6.75053 6.80586 7.06235 7.32833 7.50130 8.91051 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.038866 B = 0.005888 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.258661 B = 4754.349894 C = 5235.926523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.008 0.992 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.265 1.265 13 N -0.694 5.694 14 C 0.588 3.412 15 O -0.574 6.574 16 C -0.122 4.122 17 C 0.108 3.892 18 N -0.351 5.351 19 C 0.075 3.925 20 N -0.093 5.093 21 N -0.231 5.231 22 H 0.033 0.967 23 H 0.041 0.959 24 H 0.047 0.953 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.266 0.734 28 H 0.402 0.598 29 H 0.238 0.762 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 7.931 -12.282 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.026 0.974 5 C -0.589 4.589 6 H 0.083 0.917 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.793 3.207 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.190 1.190 13 N -0.341 5.341 14 C 0.373 3.627 15 O -0.454 6.454 16 C -0.262 4.262 17 C -0.050 4.050 18 N -0.136 5.136 19 C -0.063 4.063 20 N -0.074 5.074 21 N -0.104 5.104 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.236 0.764 29 H 0.254 0.746 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.961 7.912 -12.699 18.547 hybrid contribution 0.558 -0.113 0.822 1.000 sum -10.402 7.799 -11.877 17.609 Atomic orbital electron populations 1.21678 0.96604 0.99351 1.00446 1.21792 0.94165 0.98860 1.01268 1.18485 0.93745 0.89419 0.80890 0.97370 1.21555 0.91520 1.39152 1.06717 0.91718 1.25698 1.03191 0.94244 0.94911 1.70026 1.36952 1.38203 1.09796 0.85398 0.79263 0.77577 0.78417 1.20297 1.20593 1.18979 1.46182 1.15226 1.54834 1.17821 1.17135 0.82305 0.78068 0.85215 1.90739 1.52331 1.62237 1.40121 1.21613 0.95520 1.13071 0.96015 1.23778 0.99642 0.93706 0.87918 1.50720 1.14317 1.38173 1.10397 1.22731 0.86771 0.97303 0.99517 1.81839 0.90294 1.17215 1.18064 1.74609 1.25831 1.10633 0.99329 0.94766 0.94000 0.93429 0.94542 0.90567 0.92476 0.76382 0.74602 0.87313 0.85247 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.52 71.98 0.61 -4.97 16 2 C -0.12 -6.17 5.45 30.59 0.17 -6.00 16 3 C 0.28 14.77 2.24 44.25 0.10 14.86 16 4 H 0.01 0.51 7.57 -2.39 -0.02 0.50 16 5 C -0.55 -30.45 8.73 25.60 0.22 -30.23 16 6 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -52.43 11.29 21.45 0.24 -52.19 16 9 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.69 -31.75 5.01 -449.28 -2.25 -34.00 16 14 C 0.59 24.89 6.39 86.69 0.55 25.45 16 15 O -0.57 -26.60 14.01 -4.01 -0.06 -26.66 16 16 C -0.12 -4.16 6.99 40.81 0.29 -3.87 16 17 C 0.11 2.54 11.31 83.85 0.95 3.49 16 18 N -0.35 -7.02 4.03 -368.60 -1.49 -8.51 16 19 C 0.08 0.49 11.51 127.77 1.47 1.96 16 20 N -0.09 -2.73 13.78 37.02 0.51 -2.22 16 21 N -0.23 -8.03 12.04 -50.00 -0.60 -8.64 16 22 H 0.03 1.63 7.85 -2.39 -0.02 1.61 16 23 H 0.04 1.84 5.66 -2.39 -0.01 1.82 16 24 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.08 4.24 5.95 -2.39 -0.01 4.23 16 27 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.40 17.38 8.23 -92.71 -0.76 16.62 16 29 H 0.24 3.77 8.06 -2.91 -0.02 3.74 16 30 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -71.88 277.54 3.57 -68.31 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.38 Total: 16.41 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 4.81 Total: 2.23 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.59 Total: -105.55 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.06 Total: -26.66 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -71.88 3.57 -68.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288732380.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.876 kcal (2) G-P(sol) polarization free energy of solvation -71.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds