Wall clock time and date at job start Sun Mar 29 2020 22:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47256 * 2 1 4 4 N 1.46501 * 109.47150 * 239.99474 * 2 1 3 5 5 C 1.39988 * 119.99747 * 85.00403 * 4 2 1 6 6 C 1.40432 * 125.97374 * 0.02562 * 5 4 2 7 7 C 1.35251 * 107.86019 * 179.73886 * 6 5 4 8 8 N 1.34962 * 107.86128 * 0.42675 * 7 6 5 9 9 C 1.46500 * 125.97410 * 179.83595 * 8 7 6 10 10 C 1.50706 * 109.47299 * 124.71196 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 N 1.31219 * 125.97677 * 180.02562 * 5 4 2 19 19 C 1.50698 * 109.46837 * 119.99842 * 2 1 3 20 20 N 1.34774 * 120.00089 * 299.99910 * 19 2 1 21 21 O 1.21290 * 120.00084 * 119.99700 * 19 2 1 22 22 H 1.09007 * 109.47066 * 60.00377 * 1 2 3 23 23 H 1.09002 * 109.47272 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47220 * 300.00474 * 1 2 3 25 25 H 0.96999 * 120.00325 * 265.00515 * 4 2 1 26 26 H 1.07998 * 126.07497 * 0.02562 * 6 5 4 27 27 H 1.08000 * 126.07179 * 180.26370 * 7 6 5 28 28 H 1.09004 * 109.47078 * 4.71958 * 9 8 7 29 29 H 1.08993 * 109.47364 * 244.71729 * 9 8 7 30 30 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 31 31 H 0.97001 * 120.00390 * 0.02562 * 20 19 2 32 32 H 0.97001 * 120.00265 * 180.02562 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1521 0.0076 -2.4020 6 6 1.8567 1.3652 -2.6062 7 6 2.1235 1.6578 -3.8995 8 7 2.5618 0.5299 -4.4971 9 6 2.9597 0.3987 -5.9010 10 6 4.3598 -0.1538 -5.9767 11 1 4.8990 -0.3844 -5.0699 12 6 4.9523 -0.3647 -7.2036 13 7 4.2936 -0.0888 -8.3080 14 14 6.6874 -1.0501 -7.2976 15 1 7.0886 -1.1887 -8.7206 16 1 7.6228 -0.1259 -6.6073 17 1 6.7303 -2.3806 -6.6394 18 7 2.5755 -0.4919 -3.5391 19 6 2.0323 -0.7104 1.2305 20 7 1.7067 -0.2499 2.4546 21 8 2.7295 -1.6966 1.1193 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 2.2490 -1.6319 -1.1525 26 1 1.4869 2.0546 -1.8616 27 1 2.0043 2.6221 -4.3709 28 1 2.9289 1.3772 -6.3803 29 1 2.2741 -0.2777 -6.4113 30 1 3.3925 0.2669 -8.2594 31 1 1.1487 0.5386 2.5436 32 1 2.0303 -0.7069 3.2466 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309127412.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:22 Heat of formation + Delta-G solvation = 8.696504 kcal Electronic energy + Delta-G solvation = -16347.346653 eV Core-core repulsion = 13536.273638 eV Total energy + Delta-G solvation = -2811.073014 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.89222 -40.73499 -37.02726 -35.77037 -34.84352 -32.97091 -31.23795 -30.13229 -27.93129 -25.58312 -24.76719 -22.31784 -21.56591 -20.68542 -19.21314 -18.68628 -18.29897 -17.37221 -16.39984 -16.27167 -16.01323 -15.72411 -15.47407 -15.06314 -14.69382 -14.22994 -13.76780 -13.71094 -13.58712 -13.19819 -13.13062 -12.66800 -12.53618 -11.96032 -11.54903 -11.23631 -11.04588 -10.81188 -10.70296 -10.67444 -9.56418 -8.86074 -8.51758 -6.54410 1.27558 1.49295 1.52788 1.56172 1.59823 1.78248 2.19977 2.42942 2.48984 2.80829 3.01397 3.88655 3.94523 4.08346 4.21681 4.26603 4.61418 4.69397 4.82190 4.86212 4.89198 5.02276 5.31570 5.47124 5.64592 5.86386 5.94297 6.21505 6.33816 6.46793 6.52300 6.68660 7.20075 7.27840 7.32003 8.58783 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.037200 B = 0.005048 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.515428 B = 5545.746761 C = 6101.315630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.124 0.876 4 N -0.714 5.714 5 C 0.313 3.687 6 C -0.316 4.316 7 C 0.062 3.938 8 N -0.357 5.357 9 C 0.262 3.738 10 C -0.620 4.620 11 H 0.039 0.961 12 C -0.019 4.019 13 N -0.924 5.924 14 Si 1.119 2.881 15 H -0.271 1.271 16 H -0.270 1.270 17 H -0.281 1.281 18 N -0.396 5.396 19 C 0.514 3.486 20 N -0.824 5.824 21 O -0.590 6.590 22 H 0.069 0.931 23 H 0.050 0.950 24 H 0.109 0.891 25 H 0.398 0.602 26 H 0.179 0.821 27 H 0.199 0.801 28 H 0.053 0.947 29 H 0.008 0.992 30 H 0.261 0.739 31 H 0.422 0.578 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.414 6.946 20.501 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.141 0.859 4 N -0.356 5.356 5 C 0.055 3.945 6 C -0.348 4.348 7 C -0.086 4.086 8 N -0.137 5.137 9 C 0.142 3.858 10 C -0.658 4.658 11 H 0.058 0.942 12 C -0.219 4.219 13 N -0.560 5.560 14 Si 0.940 3.060 15 H -0.196 1.196 16 H -0.195 1.195 17 H -0.207 1.207 18 N -0.229 5.229 19 C 0.298 3.702 20 N -0.389 5.389 21 O -0.470 6.470 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.127 0.873 25 H 0.233 0.767 26 H 0.196 0.804 27 H 0.216 0.784 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.255 0.745 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -7.432 5.038 18.531 20.591 hybrid contribution -1.536 0.690 1.478 2.241 sum -8.967 5.728 20.009 22.662 Atomic orbital electron populations 1.22260 0.91538 1.03007 1.04810 1.20808 0.96372 0.97441 0.81557 0.85860 1.43377 1.76011 1.12004 1.04255 1.19523 0.95877 0.91979 0.87089 1.21186 1.21529 0.94687 0.97446 1.23121 0.98036 0.93193 0.94291 1.48433 1.49701 1.06246 1.09293 1.19273 0.95329 0.97550 0.73642 1.22307 1.00195 1.48026 0.95290 0.94239 1.27244 1.08959 0.94657 0.90998 1.70944 1.13370 1.42073 1.29608 0.82897 0.70115 0.76391 0.76634 1.19612 1.19502 1.20671 1.77378 1.32497 1.14802 0.98216 1.20871 0.78888 0.83734 0.86696 1.43537 1.54890 1.34008 1.06453 1.90762 1.40033 1.28790 1.87430 0.91209 0.93106 0.87292 0.76731 0.80369 0.78391 0.92888 0.97369 0.92984 0.74542 0.75677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.40 71.98 0.68 -1.59 16 2 C 0.15 3.00 2.98 44.25 0.13 3.13 16 3 H 0.12 2.01 7.14 -2.39 -0.02 1.99 16 4 N -0.71 -23.23 5.16 -326.97 -1.69 -24.92 16 5 C 0.31 12.31 8.14 133.39 1.09 13.39 16 6 C -0.32 -10.26 9.92 22.12 0.22 -10.04 16 7 C 0.06 2.29 11.44 83.52 0.96 3.25 16 8 N -0.36 -17.17 3.67 -351.83 -1.29 -18.46 16 9 C 0.26 14.03 5.57 85.64 0.48 14.51 16 10 C -0.62 -37.06 9.24 25.60 0.24 -36.82 16 11 H 0.04 2.50 7.81 -2.91 -0.02 2.48 16 12 C -0.02 -1.11 5.46 84.65 0.46 -0.65 16 13 N -0.92 -55.60 13.65 21.45 0.29 -55.31 16 14 Si 1.12 52.05 29.90 68.60 2.05 54.10 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 N -0.40 -19.79 12.42 -54.54 -0.68 -20.46 16 19 C 0.51 10.81 7.49 87.66 0.66 11.46 16 20 N -0.82 -7.77 8.77 -173.53 -1.52 -9.29 16 21 O -0.59 -19.20 16.67 -3.06 -0.05 -19.25 16 22 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.11 0.59 7.56 -2.39 -0.02 0.57 16 25 H 0.40 14.56 7.92 -92.71 -0.73 13.82 16 26 H 0.18 3.96 7.45 -2.91 -0.02 3.93 16 27 H 0.20 5.52 8.06 -2.91 -0.02 5.50 16 28 H 0.05 2.68 7.94 -2.39 -0.02 2.66 16 29 H 0.01 0.48 8.00 -2.39 -0.02 0.46 16 30 H 0.26 15.48 7.22 -92.71 -0.67 14.81 16 31 H 0.42 0.65 8.25 -92.71 -0.76 -0.11 16 32 H 0.41 3.26 8.93 -92.71 -0.83 2.43 16 Total: -1.00 -81.91 283.77 0.96 -80.94 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -1.06 Total: 15.99 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 4.90 Total: -3.36 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -4.88 Total: -128.44 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 14 Polarization: 52.05 SS G_CDS: 2.05 Total: 54.10 kcal Total: -81.91 0.96 -80.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309127412.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.641 kcal (2) G-P(sol) polarization free energy of solvation -81.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds