Wall clock time and date at job start Sun Mar 29 2020 22:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 N 1.46497 * 109.47134 * 179.97438 * 16 15 13 18 18 C 1.35319 * 125.86803 * 124.71222 * 17 16 15 19 19 C 1.35348 * 106.17071 * 179.90785 * 18 17 16 20 20 N 1.33770 * 106.50213 * 0.35284 * 19 18 17 21 21 N 1.28633 * 108.88364 * 359.77507 * 20 19 18 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 27 27 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 28 28 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 29 29 H 1.09005 * 109.46886 * 299.99809 * 16 15 13 30 30 H 1.09003 * 109.47641 * 59.99741 * 16 15 13 31 31 H 1.07999 * 126.91012 * 0.02562 * 18 17 16 32 32 H 1.08008 * 126.74969 * 180.12776 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 7 3.1893 -0.4356 -5.9550 18 6 2.5560 -0.4969 -7.1492 19 6 3.3552 -1.2257 -7.9628 20 7 4.4205 -1.5767 -7.2340 21 7 4.2919 -1.0931 -6.0490 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 0.7089 1.1611 3.4845 26 1 2.2490 -1.6317 -1.1527 27 1 3.6480 -1.1211 -3.3986 28 1 1.9760 -1.5503 -3.8327 29 1 1.7019 0.6477 -4.9480 30 1 3.3741 1.0764 -4.5137 31 1 1.6051 -0.0519 -7.4027 32 1 3.1678 -1.4777 -8.9962 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330432605.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:18 Heat of formation + Delta-G solvation = 30.025183 kcal Electronic energy + Delta-G solvation = -16257.401767 eV Core-core repulsion = 13447.253633 eV Total energy + Delta-G solvation = -2810.148133 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.16198 -40.68077 -36.94600 -36.07546 -34.35166 -32.34054 -31.90019 -30.55023 -27.35456 -26.36437 -23.61860 -23.15791 -22.11199 -21.13252 -19.12841 -18.43662 -17.51685 -17.16203 -17.03007 -16.55290 -15.99295 -15.72855 -15.07749 -14.81338 -14.46377 -14.17779 -13.67975 -13.61665 -12.99960 -12.92062 -12.76391 -12.70649 -12.38882 -12.28590 -12.15413 -11.84848 -11.17705 -11.10984 -10.80516 -10.59560 -10.30132 -9.78417 -8.19063 -6.36127 0.69194 1.36019 1.44439 1.45592 1.55642 1.67051 1.73170 2.35404 2.63447 3.11768 3.43755 3.65816 3.77275 3.95510 4.27552 4.31109 4.36103 4.50912 4.67173 4.75940 4.91165 4.92958 5.09113 5.32124 5.42974 5.58940 5.65657 5.67895 5.88301 6.09759 6.71676 6.89513 7.30606 7.48867 7.55765 8.86983 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.055496 B = 0.004274 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.419487 B = 6549.237316 C = 6867.771601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H 0.003 0.997 4 C -0.549 4.549 5 H 0.072 0.928 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.970 3.030 9 H -0.271 1.271 10 H -0.266 1.266 11 H -0.286 1.286 12 N -0.704 5.704 13 C 0.508 3.492 14 O -0.595 6.595 15 C -0.137 4.137 16 C 0.135 3.865 17 N -0.289 5.289 18 C -0.034 4.034 19 C -0.064 4.064 20 N -0.312 5.312 21 N -0.128 5.128 22 H 0.039 0.961 23 H 0.065 0.935 24 H 0.018 0.982 25 H 0.266 0.734 26 H 0.406 0.594 27 H 0.111 0.889 28 H 0.120 0.880 29 H 0.136 0.864 30 H 0.100 0.900 31 H 0.233 0.767 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 -4.453 -16.135 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.020 0.980 4 C -0.588 4.588 5 H 0.090 0.910 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.190 1.190 11 H -0.212 1.212 12 N -0.352 5.352 13 C 0.295 3.705 14 O -0.477 6.477 15 C -0.178 4.178 16 C 0.014 3.986 17 N -0.083 5.083 18 C -0.185 4.185 19 C -0.222 4.222 20 N -0.178 5.178 21 N -0.107 5.107 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.241 0.759 27 H 0.129 0.871 28 H 0.138 0.862 29 H 0.154 0.846 30 H 0.118 0.882 31 H 0.249 0.751 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.780 -3.968 -15.241 15.768 hybrid contribution -0.685 -0.070 0.620 0.927 sum 0.094 -4.038 -14.621 15.168 Atomic orbital electron populations 1.21895 0.98038 0.99506 0.99824 1.18375 0.91298 0.92029 0.81787 0.97959 1.21565 1.32644 1.13588 0.90962 0.91021 1.25760 0.94881 0.95548 1.02234 1.70040 1.36958 1.23805 1.24623 0.85376 0.78947 0.78079 0.78131 1.19662 1.19003 1.21225 1.46294 1.64778 1.14392 1.09784 1.20767 0.77544 0.86929 0.85305 1.90667 1.53258 1.17833 1.85947 1.21746 1.05419 0.99531 0.91097 1.21877 1.03356 0.93614 0.79728 1.47704 1.14145 1.34313 1.12131 1.24491 1.03661 1.05515 0.84856 1.24277 0.92025 1.02408 1.03452 1.75065 1.24043 1.20216 0.98434 1.78288 1.05091 1.11235 1.16063 0.94155 0.91604 0.96336 0.92523 0.75910 0.87074 0.86189 0.84648 0.88176 0.75063 0.76278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.46 9.26 71.98 0.67 -5.79 16 2 C 0.27 13.35 2.56 44.24 0.11 13.46 16 3 H 0.00 0.15 7.58 -2.39 -0.02 0.13 16 4 C -0.55 -28.40 8.73 25.60 0.22 -28.18 16 5 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 6 C 0.02 0.85 5.30 84.66 0.45 1.29 16 7 N -0.92 -51.49 11.32 21.45 0.24 -51.24 16 8 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 9 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.70 -27.06 5.07 -446.10 -2.26 -29.32 16 13 C 0.51 17.66 7.79 87.66 0.68 18.35 16 14 O -0.59 -25.39 15.64 -3.02 -0.05 -25.44 16 15 C -0.14 -3.19 5.83 29.85 0.17 -3.02 16 16 C 0.14 2.79 5.74 86.38 0.50 3.29 16 17 N -0.29 -6.18 3.44 -347.73 -1.20 -7.37 16 18 C -0.03 -0.51 11.57 83.49 0.97 0.45 16 19 C -0.06 -1.14 12.05 83.73 1.01 -0.13 16 20 N -0.31 -8.48 12.41 -58.25 -0.72 -9.20 16 21 N -0.13 -3.56 12.91 37.02 0.48 -3.08 16 22 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.07 3.53 6.07 -2.39 -0.01 3.51 16 24 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 26 H 0.41 13.13 8.54 -92.70 -0.79 12.34 16 27 H 0.11 2.57 8.12 -2.39 -0.02 2.55 16 28 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.14 2.26 8.03 -2.38 -0.02 2.24 16 30 H 0.10 2.29 8.10 -2.39 -0.02 2.27 16 31 H 0.23 1.28 8.06 -2.91 -0.02 1.25 16 32 H 0.22 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -70.34 283.51 3.64 -66.70 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.34 Total: 15.83 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 4.78 Total: -0.28 kcal Atomic # 7 Polarization: -96.76 SS G_CDS: -3.46 Total: -100.22 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.44 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -70.34 3.64 -66.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330432605.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.727 kcal (2) G-P(sol) polarization free energy of solvation -70.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds