Wall clock time and date at job start Sun Mar 29 2020 22:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99881 * 2 1 4 4 C 1.50706 * 109.46949 * 270.00337 * 3 2 1 5 5 O 1.21288 * 120.00224 * 359.72213 * 4 3 2 6 6 N 1.34777 * 119.99766 * 179.97438 * 4 3 2 7 7 C 1.37095 * 119.99970 * 179.97438 * 6 4 3 8 8 H 1.07999 * 119.99992 * 0.02562 * 7 6 4 9 9 C 1.38956 * 120.00025 * 180.02562 * 7 6 4 10 10 N 1.31404 * 120.00146 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99914 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.46742 * 90.00261 * 11 9 7 13 13 H 1.48501 * 109.47216 * 210.00118 * 11 9 7 14 14 H 1.48499 * 109.47135 * 330.00460 * 11 9 7 15 15 C 1.39991 * 119.99985 * 180.02562 * 2 1 3 16 16 C 1.40426 * 125.97188 * 184.71749 * 15 2 1 17 17 C 1.35251 * 107.85942 * 179.82359 * 16 15 2 18 18 N 1.34963 * 107.86299 * 0.42757 * 17 16 15 19 19 C 1.46498 * 125.97094 * 179.72745 * 18 17 16 20 20 N 1.31224 * 125.97604 * 5.01851 * 15 2 1 21 21 H 1.08997 * 109.47514 * 90.00045 * 1 2 3 22 22 H 1.09003 * 109.46763 * 209.99449 * 1 2 3 23 23 H 1.08995 * 109.47081 * 329.99868 * 1 2 3 24 24 H 1.09000 * 109.47175 * 150.00363 * 3 2 1 25 25 H 1.09001 * 109.47297 * 29.99871 * 3 2 1 26 26 H 0.96999 * 120.00043 * 0.02562 * 6 4 3 27 27 H 0.96996 * 120.00328 * 179.97438 * 10 9 7 28 28 H 1.07999 * 126.07029 * 359.95098 * 16 15 2 29 29 H 1.08000 * 126.07154 * 180.13233 * 17 16 15 30 30 H 1.08999 * 109.47110 * 269.97479 * 19 18 17 31 31 H 1.08995 * 109.47188 * 29.97665 * 19 18 17 32 32 H 1.08999 * 109.46978 * 149.97593 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 8 2.0589 1.0187 -2.3428 6 7 3.1106 2.8516 -1.6671 7 6 3.3395 3.2472 -2.9597 8 1 2.9889 2.6392 -3.7806 9 6 4.0226 4.4303 -3.2136 10 7 4.2415 4.8097 -4.4525 11 14 4.6283 5.4823 -1.7937 12 1 6.0015 5.0612 -1.4164 13 1 4.6437 6.9088 -2.2059 14 1 3.7213 5.3130 -0.6301 15 6 2.1650 -1.2124 -0.0005 16 6 3.5583 -1.3604 0.0929 17 6 3.8378 -2.6834 0.0616 18 7 2.6706 -3.3505 -0.0568 19 6 2.5148 -4.8051 -0.1331 20 7 1.6343 -2.4088 -0.0940 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 3.1500 1.1384 0.5138 25 1 1.6084 2.0284 0.5138 26 1 3.4258 3.3975 -0.9299 27 1 4.7180 5.6358 -4.6297 28 1 4.2786 -0.5601 0.1770 29 1 4.8210 -3.1270 0.1165 30 1 2.5536 -5.1205 -1.1758 31 1 3.3197 -5.2864 0.4222 32 1 1.5550 -5.0908 0.2973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330576807.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:13 Heat of formation + Delta-G solvation = 68.911265 kcal Electronic energy + Delta-G solvation = -16650.862339 eV Core-core repulsion = 13842.400433 eV Total energy + Delta-G solvation = -2808.461906 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.74254 -38.43819 -35.88604 -33.84928 -32.27788 -31.62905 -29.95830 -28.19953 -26.86901 -24.86488 -23.55703 -20.74283 -19.80218 -19.10819 -18.18877 -17.05318 -16.04891 -15.35320 -15.16824 -14.97026 -14.49058 -13.96546 -13.68602 -13.37680 -13.10968 -12.64866 -12.49092 -12.39800 -12.27562 -12.04520 -11.74266 -11.44409 -11.08122 -10.57660 -10.15557 -9.97506 -9.83775 -9.53029 -8.61865 -8.34004 -8.14125 -7.08996 -6.27416 -3.78557 2.24070 2.62368 3.04984 3.09269 3.17421 3.35788 3.66328 3.77841 4.13280 4.73798 4.77903 5.00027 5.18421 5.20171 5.39633 5.44184 5.53512 5.66510 5.85277 5.88762 5.96065 6.02210 6.15359 6.23947 6.58030 7.22040 7.37861 7.61541 7.89824 8.18030 8.30016 8.64798 8.99757 9.46483 9.87933 10.85993 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.037951 B = 0.005649 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.623806 B = 4955.151300 C = 5128.089859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.582 5.582 3 C 0.124 3.876 4 C 0.428 3.572 5 O -0.562 6.562 6 N -0.592 5.592 7 C -0.303 4.303 8 H 0.118 0.882 9 C 0.041 3.959 10 N -0.883 5.883 11 Si 0.880 3.120 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.357 3.643 16 C -0.299 4.299 17 C 0.071 3.929 18 N -0.388 5.388 19 C 0.113 3.887 20 N -0.357 5.357 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.370 0.630 27 H 0.273 0.727 28 H 0.143 0.857 29 H 0.169 0.831 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.890 -11.611 13.973 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.303 5.303 3 C -0.004 4.004 4 C 0.212 3.788 5 O -0.443 6.443 6 N -0.232 5.232 7 C -0.432 4.432 8 H 0.135 0.865 9 C -0.162 4.162 10 N -0.524 5.524 11 Si 0.706 3.294 12 H -0.196 1.196 13 H -0.203 1.203 14 H -0.194 1.194 15 C 0.100 3.900 16 C -0.331 4.331 17 C -0.075 4.075 18 N -0.170 5.170 19 C -0.029 4.029 20 N -0.189 5.189 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.203 0.797 27 H 0.083 0.917 28 H 0.160 0.840 29 H 0.187 0.813 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.217 -12.648 13.078 18.328 hybrid contribution 1.427 1.496 0.810 2.221 sum -0.790 -11.151 13.888 17.828 Atomic orbital electron populations 1.21465 0.78929 1.01385 1.01402 1.44984 1.04304 0.99910 1.81066 1.21169 0.98018 0.85313 0.95905 1.20622 0.83819 0.83140 0.91229 1.90579 1.53842 1.54284 1.45608 1.42250 1.51882 1.20981 1.08090 1.19426 1.34031 1.06489 0.83251 0.86485 1.25040 0.97524 0.97080 0.96565 1.69622 1.40937 1.23696 1.18119 0.86669 0.79687 0.80947 0.82065 1.19620 1.20264 1.19404 1.19085 0.90184 0.86537 0.94165 1.21081 0.94542 0.96212 1.21267 1.22271 0.91641 0.92421 1.01136 1.47913 1.03666 1.05826 1.59639 1.21653 1.03679 0.74978 1.02620 1.77379 1.10134 0.96069 1.35357 0.93387 0.91760 0.92089 0.89183 0.88917 0.79721 0.91676 0.83952 0.81344 0.91431 0.90102 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.76 10.62 59.85 0.64 2.39 16 2 N -0.58 -10.50 2.50 -182.67 -0.46 -10.95 16 3 C 0.12 2.13 6.00 -5.19 -0.03 2.09 16 4 C 0.43 9.92 7.85 -10.98 -0.09 9.84 16 5 O -0.56 -15.85 16.01 5.55 0.09 -15.76 16 6 N -0.59 -14.17 5.09 -10.96 -0.06 -14.22 16 7 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 9 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 10 N -0.88 -26.08 13.96 55.50 0.77 -25.31 16 11 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 15 C 0.36 6.68 7.59 -154.54 -1.17 5.50 16 16 C -0.30 -4.97 9.94 -39.82 -0.40 -5.36 16 17 C 0.07 0.98 11.48 -17.24 -0.20 0.79 16 18 N -0.39 -5.67 4.01 -68.18 -0.27 -5.94 16 19 C 0.11 1.03 11.47 59.85 0.69 1.72 16 20 N -0.36 -6.53 12.00 31.41 0.38 -6.15 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.06 0.94 7.75 -51.93 -0.40 0.54 16 23 H 0.06 0.78 7.89 -51.93 -0.41 0.37 16 24 H 0.09 1.33 6.77 -51.93 -0.35 0.98 16 25 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 26 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.14 2.20 7.22 -52.49 -0.38 1.83 16 29 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 282.25 15.07 4.25 4.25 Total: -1.00 -37.08 282.25 -4.68 -41.75 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -3.86 Total: 8.55 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -0.81 Total: 9.16 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.36 Total: -62.57 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.09 Total: -15.76 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -37.08 -4.68 -41.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330576807.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.666 kcal (2) G-P(sol) polarization free energy of solvation -37.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds