Wall clock time and date at job start Sun Mar 29 2020 22:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46935 * 2 1 4 4 N 1.30834 * 125.96206 * 265.30818 * 3 2 1 5 5 C 1.33237 * 109.83085 * 180.12890 * 4 3 2 6 6 C 1.50694 * 125.52959 * 179.85764 * 5 4 3 7 7 H 1.09002 * 109.47208 * 344.71264 * 6 5 4 8 8 C 1.52998 * 109.47384 * 104.71207 * 6 5 4 9 9 N 1.46496 * 109.47229 * 224.71570 * 6 5 4 10 10 C 1.34777 * 120.00258 * 154.99980 * 9 6 5 11 11 O 1.21682 * 119.99992 * 359.97438 * 10 9 6 12 12 C 1.46376 * 119.99803 * 180.02562 * 10 9 6 13 13 H 1.07995 * 120.00124 * 359.71785 * 12 10 9 14 14 C 1.40050 * 119.99863 * 180.02562 * 12 10 9 15 15 N 1.30676 * 119.99974 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00158 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47086 * 59.99576 * 16 14 12 18 18 H 1.48503 * 109.47155 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46879 * 299.99519 * 16 14 12 20 20 N 1.30718 * 108.94286 * 359.58258 * 5 4 3 21 21 N 1.34428 * 125.96245 * 84.98099 * 3 2 1 22 22 H 0.97004 * 126.81637 * 359.97438 * 21 3 2 23 23 H 1.08995 * 109.47515 * 59.99615 * 1 2 3 24 24 H 1.09000 * 109.47621 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46923 * 299.99511 * 1 2 3 26 26 H 1.09006 * 109.46421 * 240.00380 * 2 1 3 27 27 H 1.08995 * 109.47515 * 120.00385 * 2 1 3 28 28 H 1.09001 * 109.47093 * 180.02562 * 8 6 5 29 29 H 1.09002 * 109.47121 * 299.99973 * 8 6 5 30 30 H 1.08994 * 109.47090 * 60.00153 * 8 6 5 31 31 H 0.96999 * 119.99694 * 334.99370 * 9 6 5 32 32 H 0.96996 * 119.99793 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3700 2.1164 -1.0554 5 6 2.7707 3.3323 -0.6863 6 6 3.2405 4.4198 -1.6176 7 1 3.4625 3.9907 -2.5947 8 6 2.1436 5.4767 -1.7620 9 7 4.4492 5.0420 -1.0716 10 6 5.3245 5.6515 -1.8955 11 8 5.1110 5.6847 -3.0930 12 6 6.5324 6.2726 -1.3499 13 1 6.7200 6.2464 -0.2867 14 6 7.4417 6.9065 -2.2060 15 7 7.2119 6.9430 -3.4919 16 14 8.9829 7.6997 -1.5097 17 1 9.7996 6.6708 -0.8171 18 1 9.7743 8.2979 -2.6148 19 1 8.6003 8.7607 -0.5437 20 7 2.6847 3.4307 0.6144 21 7 2.2057 2.1969 1.0839 22 1 2.0332 1.9532 2.0069 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8932 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.4833 6.2631 -2.4360 29 1 1.2443 5.0138 -2.1683 30 1 1.9217 5.9058 -0.7850 31 1 4.6195 5.0153 -0.1170 32 1 7.8418 7.3817 -4.0848 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331053796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:28 Heat of formation + Delta-G solvation = 32.446248 kcal Electronic energy + Delta-G solvation = -16474.333481 eV Core-core repulsion = 13664.290333 eV Total energy + Delta-G solvation = -2810.043148 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.04974 -37.50392 -34.89682 -33.71839 -32.42764 -32.04552 -30.03426 -29.12767 -26.06170 -24.54084 -23.78160 -20.96069 -20.28348 -19.07072 -17.98889 -17.00757 -15.65469 -15.30010 -14.99765 -14.76139 -14.31700 -14.01950 -13.14310 -13.11383 -12.70612 -12.35116 -12.28171 -11.81663 -11.61029 -11.56984 -11.32429 -11.02306 -10.94888 -10.66985 -10.39965 -10.21061 -9.92324 -9.85581 -9.36796 -8.80113 -7.57987 -7.51643 -6.13854 -4.59069 1.68513 2.69282 3.01831 3.20031 3.24388 3.26722 3.92219 4.16512 4.56855 4.62632 4.72184 4.87903 4.89017 5.17113 5.32485 5.46563 5.65847 5.75726 5.83963 5.95268 6.11071 6.22707 6.38709 6.51173 6.63780 6.87757 7.10660 7.48479 7.96857 8.08861 8.28637 8.38092 9.07156 9.57617 10.64487 10.82668 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.047386 B = 0.004993 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.749694 B = 5606.937273 C = 5814.376473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C 0.277 3.723 4 N -0.530 5.530 5 C 0.240 3.760 6 C 0.243 3.757 7 H 0.103 0.897 8 C -0.150 4.150 9 N -0.757 5.757 10 C 0.558 3.442 11 O -0.578 6.578 12 C -0.543 4.543 13 H 0.067 0.933 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.908 3.092 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.268 1.268 20 N -0.307 5.307 21 N -0.488 5.488 22 H 0.436 0.564 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.385 0.615 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 -11.636 9.434 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.002 4.002 4 N -0.259 5.259 5 C -0.043 4.043 6 C 0.134 3.866 7 H 0.121 0.879 8 C -0.210 4.210 9 N -0.413 5.413 10 C 0.362 3.638 11 O -0.460 6.460 12 C -0.580 4.580 13 H 0.085 0.915 14 C -0.132 4.132 15 N -0.396 5.396 16 Si 0.733 3.267 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.193 1.193 20 N -0.136 5.136 21 N -0.205 5.205 22 H 0.281 0.719 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.217 0.783 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.834 -10.978 8.343 17.536 hybrid contribution 0.660 0.004 1.604 1.735 sum -10.174 -10.974 9.947 17.969 Atomic orbital electron populations 1.21752 0.93353 1.02717 1.02824 1.20153 0.96726 0.86561 1.05040 1.24365 0.96491 0.96172 0.83194 1.70373 1.21500 1.04669 1.29364 1.24749 0.96007 0.93326 0.90219 1.18748 0.86841 0.87097 0.93918 0.87941 1.22135 0.97315 0.99433 1.02097 1.46224 1.22446 1.62213 1.10419 1.18205 0.82401 0.77719 0.85454 1.90599 1.77292 1.62800 1.15330 1.20826 1.05039 1.37705 0.94478 0.91488 1.25692 0.98530 0.94536 0.94393 1.70012 1.33557 1.32737 1.03288 0.86431 0.81453 0.79754 0.79068 1.19353 1.20564 1.19293 1.78009 1.22382 1.00395 1.12785 1.47987 1.52028 1.10422 1.10102 0.71931 0.91557 0.91131 0.92674 0.87846 0.89537 0.90576 0.92977 0.92877 0.78343 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.04 -0.35 6.56 -27.88 -0.18 -0.53 16 3 C 0.28 3.61 7.49 -155.69 -1.17 2.44 16 4 N -0.53 -9.29 11.19 -8.16 -0.09 -9.39 16 5 C 0.24 4.59 6.95 -156.86 -1.09 3.50 16 6 C 0.24 5.24 3.12 -69.09 -0.22 5.02 16 7 H 0.10 2.44 7.58 -51.93 -0.39 2.05 16 8 C -0.15 -2.90 9.47 37.16 0.35 -2.55 16 9 N -0.76 -18.27 5.06 -56.35 -0.29 -18.55 16 10 C 0.56 16.32 7.71 -12.99 -0.10 16.22 16 11 O -0.58 -18.86 14.68 5.21 0.08 -18.78 16 12 C -0.54 -15.77 9.54 -35.63 -0.34 -16.11 16 13 H 0.07 1.80 7.85 -52.49 -0.41 1.38 16 14 C 0.09 2.51 5.50 -17.36 -0.10 2.41 16 15 N -0.77 -23.29 11.83 55.55 0.66 -22.63 16 16 Si 0.91 20.54 29.56 -169.99 -5.02 15.52 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 20 N -0.31 -5.34 12.46 32.42 0.40 -4.93 16 21 N -0.49 -6.20 7.45 32.62 0.24 -5.96 16 22 H 0.44 3.67 8.96 -182.34 -1.63 2.03 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.38 8.68 8.30 -40.82 -0.34 8.34 16 32 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 LS Contribution 285.89 15.07 4.31 4.31 Total: -1.00 -36.49 285.89 -7.48 -43.97 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.29 Total: 6.65 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -2.47 Total: 9.80 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.93 Total: -61.46 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.08 Total: -18.78 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -36.49 -7.48 -43.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331053796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.415 kcal (2) G-P(sol) polarization free energy of solvation -36.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds