Wall clock time and date at job start Sun Mar 29 2020 22:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.46734 * 2 1 4 4 N 1.30854 * 125.90274 * 305.02560 * 3 2 1 5 5 C 1.33627 * 109.78058 * 179.73590 * 4 3 2 6 6 N 1.39865 * 125.60303 * 180.02562 * 5 4 3 7 7 C 1.34776 * 120.00328 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99712 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00521 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47653 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.47288 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00346 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99776 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00543 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99936 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46837 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47351 * 120.00117 * 15 13 11 18 18 H 1.48497 * 109.47223 * 240.00430 * 15 13 11 19 19 N 1.31171 * 108.79767 * 0.02562 * 5 4 3 20 20 N 1.34381 * 125.89693 * 124.71504 * 3 2 1 21 21 H 0.97006 * 126.76490 * 0.26995 * 20 3 2 22 22 H 1.09007 * 109.47324 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47331 * 299.99465 * 1 2 3 24 24 H 1.08995 * 109.47506 * 59.99692 * 1 2 3 25 25 H 1.08996 * 109.47061 * 240.00510 * 2 1 3 26 26 H 1.08996 * 109.47062 * 120.00013 * 2 1 3 27 27 H 0.97004 * 120.00424 * 0.02562 * 6 5 4 28 28 H 1.09004 * 109.47008 * 300.00297 * 9 7 6 29 29 H 1.09005 * 109.47253 * 60.00043 * 9 7 6 30 30 H 1.09004 * 109.46784 * 299.99979 * 10 9 7 31 31 H 1.09000 * 109.47239 * 59.99995 * 10 9 7 32 32 H 0.96994 * 120.00486 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 1.7144 2.3471 -0.8680 5 6 2.3385 3.4880 -0.5608 6 7 2.2339 4.6896 -1.2690 7 6 2.9160 5.7764 -0.8568 8 8 3.6211 5.7123 0.1281 9 6 2.8029 7.0712 -1.6194 10 6 3.6707 8.1368 -0.9470 11 6 3.5570 9.4318 -1.7093 12 1 2.9289 9.4890 -2.5861 13 6 4.2548 10.5436 -1.2875 14 7 5.0193 10.4742 -0.2197 15 14 4.1133 12.1490 -2.2321 16 1 3.1959 11.9655 -3.3853 17 1 3.5766 13.2048 -1.3363 18 1 5.4545 12.5530 -2.7253 19 7 3.0655 3.2960 0.5140 20 7 2.8793 1.9571 0.8948 21 1 3.2830 1.5078 1.6539 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6697 4.7410 -2.0564 28 1 3.1424 6.9202 -2.6442 29 1 1.7635 7.3996 -1.6258 30 1 3.3315 8.2880 0.0778 31 1 4.7100 7.8084 -0.9411 32 1 5.5105 11.2563 0.0768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360383503.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:56 Heat of formation + Delta-G solvation = 41.059826 kcal Electronic energy + Delta-G solvation = -16038.825743 eV Core-core repulsion = 13229.156108 eV Total energy + Delta-G solvation = -2809.669635 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.16213 -39.21273 -35.05303 -33.90458 -33.48141 -32.04151 -31.00100 -29.59422 -25.97611 -24.58154 -23.17935 -21.14704 -20.57136 -19.55573 -18.24952 -16.80904 -16.30373 -16.02062 -15.61606 -14.96935 -14.50083 -14.43615 -14.31495 -13.36323 -13.09810 -12.51837 -12.20935 -12.17537 -11.83835 -11.44079 -11.18885 -11.01639 -10.89586 -10.58519 -10.04188 -9.98917 -9.82376 -9.69003 -9.29120 -9.08065 -8.59759 -8.32500 -5.96211 -4.00890 1.61643 2.44960 2.63368 3.02682 3.33508 3.40671 3.44039 3.48691 4.13997 4.43513 4.48139 4.80378 4.95694 5.06176 5.38792 5.38976 5.45120 5.60544 5.69992 5.91393 6.16331 6.17031 6.24938 6.78257 6.84321 6.98375 7.41141 7.74023 7.83329 8.05596 8.25340 8.36249 8.61533 9.07314 9.62830 11.14774 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.080116 B = 0.003897 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.410431 B = 7183.353257 C = 7451.371393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C 0.294 3.706 4 N -0.555 5.555 5 C 0.446 3.554 6 N -0.636 5.636 7 C 0.505 3.495 8 O -0.482 6.482 9 C -0.122 4.122 10 C 0.035 3.965 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.889 5.889 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.290 5.290 20 N -0.485 5.485 21 H 0.440 0.560 22 H 0.066 0.934 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.421 0.579 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.707 -21.434 -0.890 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.082 4.082 3 C 0.014 3.986 4 N -0.289 5.289 5 C 0.077 3.923 6 N -0.292 5.292 7 C 0.293 3.707 8 O -0.349 6.349 9 C -0.162 4.162 10 C -0.002 4.002 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.126 5.126 20 N -0.204 5.204 21 H 0.285 0.715 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.259 0.741 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.826 -20.672 -0.060 22.103 hybrid contribution -0.076 0.474 -0.364 0.603 sum -7.902 -20.197 -0.424 21.692 Atomic orbital electron populations 1.21694 0.92800 1.02368 1.03452 1.20156 0.97710 0.86038 1.04324 1.24160 0.90593 0.96926 0.86909 1.70086 1.30241 0.98880 1.29675 1.20673 0.93151 0.87772 0.90752 1.43346 1.49566 1.05708 1.30532 1.22068 0.78252 0.84681 0.85719 1.90782 1.35927 1.83116 1.25109 1.21906 1.03927 0.90412 0.99945 1.18952 0.94697 0.90523 0.96053 1.21227 1.27953 0.95211 1.12135 0.92380 1.25031 0.95267 0.99024 0.95097 1.70005 1.29142 1.29829 1.23779 0.86516 0.77816 0.83630 0.79883 1.19688 1.21030 1.21024 1.78905 1.25491 0.91863 1.16324 1.48069 1.37652 1.09101 1.25616 0.71494 0.91488 0.92505 0.90977 0.88289 0.89584 0.74136 0.89525 0.89523 0.95621 0.95621 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.87 37.16 0.37 -0.50 16 2 C -0.04 -0.26 6.56 -27.88 -0.18 -0.44 16 3 C 0.29 3.32 7.50 -155.72 -1.17 2.15 16 4 N -0.55 -8.07 11.18 -11.07 -0.12 -8.19 16 5 C 0.45 7.78 8.83 -320.86 -2.83 4.95 16 6 N -0.64 -10.57 5.44 -12.82 -0.07 -10.64 16 7 C 0.51 10.30 7.80 -10.99 -0.09 10.21 16 8 O -0.48 -12.00 14.67 5.55 0.08 -11.92 16 9 C -0.12 -2.46 5.64 -27.88 -0.16 -2.62 16 10 C 0.04 0.95 4.26 -27.89 -0.12 0.83 16 11 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 15 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 N -0.29 -5.33 10.98 30.03 0.33 -5.00 16 20 N -0.48 -6.04 7.44 32.62 0.24 -5.80 16 21 H 0.44 3.69 8.96 -182.34 -1.63 2.05 16 22 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.42 5.38 8.82 -40.82 -0.36 5.02 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 285.90 15.07 4.31 4.31 Total: -1.00 -37.60 285.90 -9.44 -47.04 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.34 Total: -0.64 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -4.59 Total: 0.94 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 1.12 Total: -56.42 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -37.60 -9.44 -47.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360383503.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.099 kcal (2) G-P(sol) polarization free energy of solvation -37.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds