Wall clock time and date at job start Sun Mar 29 2020 21:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.33067 * 2 1 4 4 C 1.54471 * 110.46826 * 237.68141 * 2 1 3 5 5 C 1.54505 * 104.06736 * 217.13935 * 4 2 1 6 6 H 1.08992 * 110.51824 * 241.35822 * 5 4 2 7 7 C 1.50697 * 110.51189 * 118.63949 * 5 4 2 8 8 O 1.21297 * 120.00411 * 340.23082 * 7 5 4 9 9 N 1.34782 * 119.99870 * 160.22090 * 7 5 4 10 10 C 1.37104 * 119.99699 * 185.58534 * 9 7 5 11 11 H 1.08003 * 119.99589 * 133.77097 * 10 9 7 12 12 C 1.38952 * 120.00251 * 313.76589 * 10 9 7 13 13 N 1.31403 * 119.99659 * 161.43050 * 12 10 9 14 14 Si 1.86796 * 119.99982 * 341.43520 * 12 10 9 15 15 H 1.48499 * 109.47302 * 94.81960 * 14 12 10 16 16 H 1.48503 * 109.47384 * 214.82417 * 14 12 10 17 17 H 1.48502 * 109.47469 * 334.82277 * 14 12 10 18 18 C 1.46497 * 120.00064 * 5.58920 * 9 7 5 19 19 C 1.47196 * 109.47143 * 272.35725 * 18 9 7 20 20 N 6.29308 * 144.29325 * 228.32472 * 2 1 3 21 21 C 1.54487 * 104.05985 * 0.02562 * 5 4 2 22 22 O 1.44421 * 110.37399 * 122.24127 * 2 1 3 23 23 H 1.09003 * 109.47406 * 299.20889 * 1 2 3 24 24 H 1.09001 * 109.47225 * 59.20705 * 1 2 3 25 25 H 1.08999 * 109.46877 * 179.21061 * 1 2 3 26 26 H 1.08999 * 110.51076 * 335.78832 * 4 2 1 27 27 H 1.09005 * 110.51414 * 98.35947 * 4 2 1 28 28 H 0.97009 * 119.99980 * 179.97438 * 13 12 10 29 29 H 1.09002 * 109.46949 * 32.36340 * 18 9 7 30 30 H 1.09003 * 109.47100 * 152.35775 * 18 9 7 31 31 H 1.08997 * 110.37120 * 265.14694 * 21 5 4 32 32 H 1.09002 * 110.37105 * 142.80781 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0702 -0.7737 -1.2230 5 6 3.3208 -1.5031 -0.6835 6 1 4.2139 -1.1736 -1.2143 7 6 3.1542 -2.9960 -0.8036 8 8 2.0465 -3.4749 -0.9259 9 7 4.2362 -3.7993 -0.7752 10 6 4.0970 -5.1448 -0.9988 11 1 4.7718 -5.6530 -1.6718 12 6 3.0880 -5.8547 -0.3594 13 7 2.7130 -7.0255 -0.8234 14 14 2.2646 -5.1445 1.1594 15 1 1.0267 -4.4270 0.7617 16 1 1.9201 -6.2444 2.0958 17 1 3.1923 -4.1973 1.8284 18 6 5.5608 -3.2347 -0.5054 19 6 6.1700 -2.7874 -1.7686 20 7 6.6401 -2.4421 -2.7434 21 6 3.3879 -1.0843 0.8020 22 8 2.0328 -0.7223 1.1451 23 1 -0.3634 0.5015 0.8970 24 1 -0.3634 0.5261 -0.8828 25 1 -0.3633 -1.0276 -0.0142 26 1 1.3314 -1.4929 -1.5767 27 1 2.3428 -0.0837 -2.0216 28 1 2.0088 -7.5212 -0.3769 29 1 5.4629 -2.3859 0.1715 30 1 6.1930 -3.9946 -0.0462 31 1 4.0514 -0.2284 0.9253 32 1 3.7255 -1.9188 1.4166 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439107457.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:11 Heat of formation + Delta-G solvation = -62.057713 kcal Electronic energy + Delta-G solvation = -17697.524294 eV Core-core repulsion = 14851.090396 eV Total energy + Delta-G solvation = -2846.433899 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.61156 -39.59699 -37.80261 -36.22099 -34.37824 -33.23581 -32.55974 -29.32228 -27.33747 -26.55454 -23.80516 -22.16930 -21.06524 -19.60125 -18.81717 -17.72049 -17.50670 -16.89377 -16.70114 -16.30184 -15.35059 -15.28446 -15.00384 -14.89799 -14.41087 -14.08044 -13.94532 -13.47344 -13.26060 -13.19432 -12.98265 -12.74481 -12.52105 -12.45810 -12.22351 -12.09589 -11.82802 -11.67818 -10.86058 -10.76312 -10.33439 -9.83730 -8.42106 -6.26589 1.25437 1.38378 1.54268 1.57900 1.77842 1.88173 2.43577 2.67459 2.94657 3.02826 3.20109 3.49415 3.76645 3.94401 4.04174 4.21075 4.32284 4.38544 4.51154 4.58835 4.66167 4.69818 4.82068 4.87518 4.99098 5.19347 5.31363 5.67832 5.83064 5.94020 6.52714 6.69267 6.82260 7.24089 7.74557 8.66389 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.019404 B = 0.012906 C = 0.009020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.673678 B = 2169.050999 C = 3103.571996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.105 0.895 4 C -0.143 4.143 5 C -0.143 4.143 6 H 0.123 0.877 7 C 0.464 3.536 8 O -0.569 6.569 9 N -0.478 5.478 10 C -0.350 4.350 11 H 0.068 0.932 12 C 0.051 3.949 13 N -0.910 5.910 14 Si 0.958 3.042 15 H -0.289 1.289 16 H -0.308 1.308 17 H -0.241 1.241 18 C 0.190 3.810 19 C 0.221 3.779 20 N -0.477 5.477 21 C 0.053 3.947 22 O -0.397 6.397 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.273 0.727 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.120 0.880 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 16.232 6.111 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.123 0.877 4 C -0.181 4.181 5 C -0.165 4.165 6 H 0.141 0.859 7 C 0.255 3.745 8 O -0.450 6.450 9 N -0.202 5.202 10 C -0.477 4.477 11 H 0.086 0.914 12 C -0.154 4.154 13 N -0.547 5.547 14 Si 0.788 3.212 15 H -0.217 1.217 16 H -0.237 1.237 17 H -0.164 1.164 18 C 0.065 3.935 19 C -0.098 4.098 20 N -0.156 5.156 21 C -0.024 4.024 22 O -0.316 6.316 23 H 0.090 0.910 24 H 0.110 0.890 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.169 0.831 30 H 0.169 0.831 31 H 0.138 0.862 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.738 16.278 4.803 17.191 hybrid contribution -0.728 -0.872 0.283 1.171 sum 2.010 15.406 5.085 16.348 Atomic orbital electron populations 1.21831 0.93325 1.01671 1.03613 1.23202 0.95728 0.95980 0.83588 0.87736 1.23061 0.96050 0.99429 0.99528 1.22811 1.02200 0.90935 1.00505 0.85881 1.21264 0.84959 0.89726 0.78562 1.90528 1.26497 1.76587 1.51424 1.43654 1.05101 1.06292 1.65143 1.18658 1.18751 0.82695 1.27579 0.91404 1.25967 0.95792 0.94353 0.99318 1.69834 1.28912 1.15976 1.39993 0.85588 0.80360 0.77304 0.77988 1.21708 1.23707 1.16392 1.19665 0.84675 1.02766 0.86434 1.30381 0.92361 0.91581 0.95445 1.81120 1.10939 1.11807 1.11746 1.23644 0.85507 1.01799 0.91441 1.89122 1.27987 1.75327 1.39201 0.90964 0.88993 0.94793 0.92028 0.87586 0.91785 0.83098 0.83139 0.86221 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.53 71.98 0.69 -2.89 16 2 C 0.07 1.79 3.92 31.09 0.12 1.91 16 3 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 4 C -0.14 -4.06 6.17 31.61 0.19 -3.86 16 5 C -0.14 -4.21 2.55 -10.52 -0.03 -4.24 16 6 H 0.12 2.91 6.61 -2.39 -0.02 2.89 16 7 C 0.46 19.76 5.17 87.66 0.45 20.21 16 8 O -0.57 -30.37 11.02 -3.08 -0.03 -30.40 16 9 N -0.48 -19.99 2.05 -645.40 -1.33 -21.31 16 10 C -0.35 -18.63 9.65 84.04 0.81 -17.82 16 11 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 12 C 0.05 2.91 4.87 84.93 0.41 3.32 16 13 N -0.91 -55.96 13.96 21.66 0.30 -55.65 16 14 Si 0.96 48.46 24.92 68.60 1.71 50.17 16 15 H -0.29 -16.27 6.35 99.48 0.63 -15.64 16 16 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 17 H -0.24 -10.48 7.02 99.48 0.70 -9.78 16 18 C 0.19 5.20 5.52 84.57 0.47 5.66 16 19 C 0.22 6.76 14.78 89.44 1.32 8.08 16 20 N -0.48 -16.70 18.54 20.00 0.37 -16.33 16 21 C 0.05 1.32 6.25 72.49 0.45 1.77 16 22 O -0.40 -12.20 11.34 -148.98 -1.69 -13.89 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.03 1.04 8.13 -2.39 -0.02 1.03 16 26 H 0.06 2.26 6.43 -2.39 -0.02 2.25 16 27 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 28 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 29 H 0.15 2.65 5.89 -2.39 -0.01 2.64 16 30 H 0.15 3.48 8.02 -2.39 -0.02 3.46 16 31 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 2.30 7.39 -2.39 -0.02 2.29 16 Total: -1.00 -77.92 270.25 5.27 -72.64 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: 1.04 Total: 2.62 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 4.90 Total: 12.15 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -0.65 Total: -93.30 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.72 Total: -44.29 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.71 Total: 50.17 kcal Total: -77.92 5.27 -72.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439107457.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.587 kcal (2) G-P(sol) polarization free energy of solvation -77.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds