Wall clock time and date at job start Sun Mar 29 2020 21:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47092 * 180.02562 * 16 15 13 18 18 C 1.41378 * 126.80613 * 124.70906 * 17 16 15 19 19 C 1.35444 * 103.98752 * 179.88878 * 18 17 16 20 20 O 1.34040 * 106.44573 * 0.36658 * 19 18 17 21 21 N 1.20914 * 111.56850 * 359.75189 * 20 19 18 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 27 27 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 28 28 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 29 29 H 1.09005 * 109.46886 * 299.99809 * 16 15 13 30 30 H 1.09003 * 109.47641 * 59.99741 * 16 15 13 31 31 H 1.08004 * 128.00335 * 0.02562 * 18 17 16 32 32 H 1.08001 * 126.77972 * 180.09634 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 6 3.2021 -0.4557 -5.9896 18 6 2.5571 -0.5320 -7.2453 19 6 3.4035 -1.2685 -8.0040 20 8 4.4414 -1.5843 -7.2169 21 7 4.3122 -1.1257 -6.1055 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.7089 1.1611 3.4845 26 1 2.2490 -1.6317 -1.1527 27 1 3.6480 -1.1211 -3.3986 28 1 1.9760 -1.5503 -3.8327 29 1 1.7019 0.6477 -4.9480 30 1 3.3741 1.0764 -4.5137 31 1 1.6097 -0.1007 -7.5335 32 1 3.2669 -1.5498 -9.0377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590433777.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:09 Heat of formation + Delta-G solvation = 9.175738 kcal Electronic energy + Delta-G solvation = -16196.735818 eV Core-core repulsion = 13353.390834 eV Total energy + Delta-G solvation = -2843.344984 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.02616 -38.94184 -35.46167 -34.65186 -32.41979 -32.12851 -31.13185 -28.85951 -25.35651 -25.09242 -23.23699 -21.40994 -20.42348 -19.34103 -17.94679 -17.63502 -16.98185 -15.73711 -15.35624 -15.18111 -14.72662 -14.22031 -13.57071 -13.27030 -13.13282 -12.40743 -12.37031 -12.05830 -11.73169 -11.54051 -11.07485 -10.97750 -10.90778 -10.68386 -10.31899 -10.22299 -10.11240 -9.75165 -9.05228 -8.98610 -8.53666 -7.89298 -6.11231 -4.20542 1.38907 2.14257 3.15543 3.26612 3.31640 3.32993 3.41904 3.98869 4.19937 4.36725 4.57902 5.00986 5.12476 5.19848 5.21500 5.33362 5.41837 5.61665 5.83732 5.89396 6.07389 6.20205 6.83353 6.97283 7.16170 7.47771 7.57299 7.70661 7.92722 8.16192 8.19074 8.68540 8.79031 9.14463 9.47068 10.94755 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.054368 B = 0.004210 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.885652 B = 6649.867542 C = 6978.423801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.709 5.709 13 C 0.502 3.498 14 O -0.558 6.558 15 C -0.137 4.137 16 C -0.026 4.026 17 C 0.023 3.977 18 C -0.231 4.231 19 C -0.066 4.066 20 O 0.096 5.904 21 N -0.364 5.364 22 H 0.014 0.986 23 H 0.026 0.974 24 H 0.090 0.910 25 H 0.265 0.735 26 H 0.389 0.611 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 -5.224 -18.024 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.357 5.357 13 C 0.286 3.714 14 O -0.438 6.438 15 C -0.178 4.178 16 C -0.064 4.064 17 C -0.136 4.136 18 C -0.252 4.252 19 C -0.147 4.147 20 O 0.030 5.970 21 N -0.068 5.068 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.221 0.779 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.189 0.811 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.991 -4.530 -17.033 17.878 hybrid contribution -0.433 -0.688 0.382 0.898 sum 2.558 -5.218 -16.652 17.637 Atomic orbital electron populations 1.22073 0.98487 0.99064 1.00878 1.18742 0.91026 0.94017 0.80092 0.93370 1.21199 1.32492 1.13240 0.90391 0.92130 1.24894 0.94806 0.94954 0.99058 1.69896 1.35855 1.22432 1.23972 0.86499 0.79190 0.79578 0.81776 1.21114 1.20158 1.20163 1.46535 1.64938 1.13583 1.10609 1.20361 0.78647 0.87512 0.84836 1.90649 1.51663 1.16156 1.85327 1.21626 1.03411 0.99199 0.93541 1.19750 1.02749 0.96582 0.87328 1.23840 0.91833 0.99954 0.98002 1.22813 1.03610 1.05533 0.93292 1.26004 0.88559 1.00669 0.99514 1.84845 1.39545 1.56659 1.15953 1.73860 1.20036 1.13451 0.99443 0.96670 0.95514 0.89161 0.92525 0.77882 0.88985 0.89464 0.88817 0.89026 0.81105 0.76885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.81 2.56 -69.09 -0.18 6.63 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.40 8.73 -34.44 -0.30 -14.70 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.71 -15.03 5.07 -54.93 -0.28 -15.31 16 13 C 0.50 10.03 7.79 -10.98 -0.09 9.94 16 14 O -0.56 -13.24 15.64 5.56 0.09 -13.16 16 15 C -0.14 -2.03 5.67 -27.88 -0.16 -2.19 16 16 C -0.03 -0.35 5.10 -27.88 -0.14 -0.50 16 17 C 0.02 0.28 6.59 -82.10 -0.54 -0.26 16 18 C -0.23 -2.16 11.12 -39.39 -0.44 -2.60 16 19 C -0.07 -0.51 12.30 29.74 0.37 -0.14 16 20 O 0.10 1.07 11.20 17.18 0.19 1.26 16 21 N -0.36 -4.93 12.06 33.42 0.40 -4.53 16 22 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.39 7.16 8.54 -40.82 -0.35 6.81 16 27 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 30 H 0.09 1.36 8.10 -51.93 -0.42 0.94 16 31 H 0.17 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.21 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 283.68 15.07 4.28 4.28 Total: -1.00 -32.23 283.68 -4.92 -37.15 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.98 Total: 4.47 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.23 Total: -5.45 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.75 Total: -44.38 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.28 Total: -11.89 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.23 -4.92 -37.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590433777.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.328 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds