Wall clock time and date at job start Sun Mar 29 2020 21:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47092 * 180.02562 * 16 15 13 18 18 C 1.41378 * 126.80613 * 124.70906 * 17 16 15 19 19 C 1.35444 * 103.98752 * 179.88878 * 18 17 16 20 20 O 1.34040 * 106.44573 * 0.36658 * 19 18 17 21 21 N 1.20914 * 111.56850 * 359.75189 * 20 19 18 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 27 27 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 28 28 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 29 29 H 1.09005 * 109.46886 * 299.99809 * 16 15 13 30 30 H 1.09003 * 109.47641 * 59.99741 * 16 15 13 31 31 H 1.08004 * 128.00335 * 0.02562 * 18 17 16 32 32 H 1.08001 * 126.77972 * 180.09634 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 6 3.2021 -0.4557 -5.9896 18 6 2.5571 -0.5320 -7.2453 19 6 3.4035 -1.2685 -8.0040 20 8 4.4414 -1.5843 -7.2169 21 7 4.3122 -1.1257 -6.1055 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.7089 1.1611 3.4845 26 1 2.2490 -1.6317 -1.1527 27 1 3.6480 -1.1211 -3.3986 28 1 1.9760 -1.5503 -3.8327 29 1 1.7019 0.6477 -4.9480 30 1 3.3741 1.0764 -4.5137 31 1 1.6097 -0.1007 -7.5335 32 1 3.2669 -1.5498 -9.0377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590433777.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:09 Heat of formation + Delta-G solvation = -13.299799 kcal Electronic energy + Delta-G solvation = -16197.710430 eV Core-core repulsion = 13353.390834 eV Total energy + Delta-G solvation = -2844.319597 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.85683 -40.63106 -36.93431 -36.12353 -34.33688 -33.08471 -32.20867 -30.70723 -27.36712 -26.46107 -24.02146 -23.03390 -21.59219 -21.04256 -19.05287 -18.58751 -18.43629 -17.41904 -17.15432 -16.61767 -15.99446 -15.69926 -14.87458 -14.72753 -14.39225 -14.13723 -13.67484 -13.47949 -13.26176 -12.95469 -12.88291 -12.74918 -12.56428 -12.27593 -12.16046 -11.94318 -11.13167 -11.01262 -10.72209 -10.58176 -10.48538 -9.76251 -8.18789 -6.36647 0.69041 1.32377 1.44065 1.46315 1.54151 1.79426 2.34243 2.52062 2.64561 3.11296 3.26778 3.66142 3.87906 4.13137 4.24636 4.35177 4.55358 4.64519 4.74765 4.76761 4.91540 4.95935 5.07632 5.08682 5.22367 5.42515 5.59871 5.68035 5.89357 6.09026 6.71004 6.94286 7.30836 7.42363 7.53647 8.87368 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.054368 B = 0.004210 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.885652 B = 6649.867542 C = 6978.423801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.002 1.002 4 C -0.551 4.551 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.285 1.285 10 H -0.263 1.263 11 H -0.272 1.272 12 N -0.707 5.707 13 C 0.499 3.501 14 O -0.599 6.599 15 C -0.119 4.119 16 C -0.021 4.021 17 C 0.003 3.997 18 C -0.242 4.242 19 C -0.042 4.042 20 O 0.090 5.910 21 N -0.398 5.398 22 H 0.014 0.986 23 H 0.040 0.960 24 H 0.066 0.934 25 H 0.266 0.734 26 H 0.405 0.595 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.194 0.806 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.556 -7.256 -19.475 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.016 0.984 4 C -0.589 4.589 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.210 1.210 10 H -0.188 1.188 11 H -0.197 1.197 12 N -0.356 5.356 13 C 0.286 3.714 14 O -0.482 6.482 15 C -0.159 4.159 16 C -0.059 4.059 17 C -0.155 4.155 18 C -0.263 4.263 19 C -0.123 4.123 20 O 0.024 5.976 21 N -0.103 5.103 22 H 0.033 0.967 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.240 0.760 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.211 0.789 32 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 3.275 -6.596 -18.507 19.919 hybrid contribution -0.516 -0.021 0.722 0.888 sum 2.759 -6.617 -17.785 19.176 Atomic orbital electron populations 1.21887 0.98121 0.99487 0.99657 1.18364 0.91296 0.91915 0.82020 0.98414 1.21536 1.32759 1.13648 0.90937 0.90977 1.25816 0.94829 0.95583 1.02347 1.70047 1.36912 1.23877 1.24715 0.85381 0.78599 0.78736 0.77521 1.21035 1.18797 1.19680 1.46321 1.65104 1.14286 1.09844 1.21241 0.77365 0.87096 0.85690 1.90629 1.53249 1.18250 1.86036 1.21531 1.03972 0.99438 0.90971 1.19598 1.02556 0.95952 0.87834 1.23784 0.92526 1.00565 0.98629 1.23135 1.04848 1.06280 0.92071 1.26909 0.86338 0.98331 1.00680 1.84795 1.40664 1.56437 1.15690 1.73861 1.20846 1.14700 1.00934 0.96712 0.94060 0.91501 0.92488 0.76007 0.88173 0.86804 0.88547 0.91014 0.78885 0.71931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 2 C 0.27 14.18 2.56 44.24 0.11 14.29 16 3 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 4 C -0.55 -29.71 8.73 25.60 0.22 -29.48 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -53.22 11.32 21.45 0.24 -52.98 16 8 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 N -0.71 -29.98 5.07 -446.10 -2.26 -32.24 16 13 C 0.50 20.06 7.79 87.66 0.68 20.74 16 14 O -0.60 -29.34 15.64 -3.02 -0.05 -29.39 16 15 C -0.12 -3.40 5.67 29.85 0.17 -3.23 16 16 C -0.02 -0.57 5.10 29.85 0.15 -0.42 16 17 C 0.00 0.07 6.59 43.58 0.29 0.35 16 18 C -0.24 -3.87 11.12 22.40 0.25 -3.62 16 19 C -0.04 -0.49 12.30 67.17 0.83 0.34 16 20 O 0.09 1.80 11.20 71.64 0.80 2.61 16 21 N -0.40 -10.30 12.06 -49.56 -0.60 -10.90 16 22 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 23 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 25 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.40 14.48 8.54 -92.70 -0.79 13.69 16 27 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.10 2.53 8.09 -2.38 -0.02 2.51 16 30 H 0.07 2.21 8.10 -2.39 -0.02 2.19 16 31 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.27 0.07 8.06 -2.91 -0.02 0.05 16 Total: -1.00 -71.82 283.68 4.32 -67.50 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.34 Total: 16.87 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 3.82 Total: -5.94 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -2.62 Total: -96.11 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: 0.75 Total: -26.78 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -71.82 4.32 -67.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590433777.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.198 kcal (2) G-P(sol) polarization free energy of solvation -71.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds