Wall clock time and date at job start Sun Mar 29 2020 22:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 119.99733 * 2 1 4 4 C 1.50699 * 109.47386 * 90.00139 * 3 2 1 5 5 H 1.08001 * 119.99792 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00570 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99842 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00090 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47501 * 90.00194 * 8 6 4 10 10 H 1.48510 * 109.47075 * 210.00166 * 8 6 4 11 11 H 1.48506 * 109.47203 * 329.99849 * 8 6 4 12 12 C 1.34775 * 119.99750 * 180.02562 * 2 1 3 13 13 O 1.21630 * 119.99614 * 185.63754 * 12 2 1 14 14 C 1.47177 * 120.00131 * 5.63333 * 12 2 1 15 15 C 1.37958 * 126.41978 * 7.03171 * 14 12 2 16 16 C 1.39842 * 107.62435 * 179.87907 * 15 14 12 17 17 N 1.40021 * 125.69254 * 180.15272 * 16 15 14 18 18 N 1.31332 * 108.61225 * 0.38440 * 16 15 14 19 19 N 1.36677 * 126.41706 * 187.33600 * 14 12 2 20 20 C 1.46499 * 126.08038 * 359.96706 * 19 14 12 21 21 H 1.09007 * 109.47441 * 95.71961 * 1 2 3 22 22 H 1.09002 * 109.47498 * 215.72234 * 1 2 3 23 23 H 1.09001 * 109.47188 * 335.71873 * 1 2 3 24 24 H 1.09003 * 109.46943 * 210.00144 * 3 2 1 25 25 H 1.08999 * 109.47602 * 329.99794 * 3 2 1 26 26 H 0.96997 * 120.00421 * 179.97438 * 7 6 4 27 27 H 1.08002 * 126.18824 * 359.97438 * 15 14 12 28 28 H 0.97002 * 120.00192 * 180.25331 * 17 16 15 29 29 H 0.97005 * 120.00220 * 0.25133 * 17 16 15 30 30 H 1.09004 * 109.47352 * 84.27211 * 20 19 14 31 31 H 1.09001 * 109.47004 * 204.27236 * 20 19 14 32 32 H 1.09006 * 109.46917 * 324.27338 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1268 2.8775 1.6728 7 7 3.5550 3.6171 0.6732 8 14 3.4387 3.4163 3.4339 9 1 4.7337 2.8587 3.9003 10 1 3.4870 4.8993 3.4967 11 1 2.3434 2.9194 4.3050 12 6 2.1388 -1.1672 -0.0005 13 8 3.3507 -1.1698 0.1030 14 6 1.4082 -2.4387 -0.1262 15 6 0.0614 -2.5872 -0.3852 16 6 -0.2136 -3.9578 -0.4243 17 7 -1.4676 -4.5329 -0.6640 18 7 0.8996 -4.6154 -0.1937 19 7 1.9360 -3.6933 -0.0024 20 6 3.3368 -4.0162 0.2798 21 1 -0.3634 -0.1024 -1.0226 22 1 -0.3634 -0.8343 0.6000 23 1 -0.3633 0.9368 0.4226 24 1 3.1498 1.1384 -0.5139 25 1 1.6084 2.0284 -0.5138 26 1 4.0317 4.4431 0.8504 27 1 -0.6514 -1.7894 -0.5328 28 1 -1.5656 -5.4979 -0.6690 29 1 -2.2383 -3.9663 -0.8251 30 1 3.5082 -3.9807 1.3556 31 1 3.5610 -5.0163 -0.0912 32 1 3.9834 -3.2916 -0.2153 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725182476.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:40 Heat of formation + Delta-G solvation = 42.521760 kcal Electronic energy + Delta-G solvation = -16917.633853 eV Core-core repulsion = 14108.027612 eV Total energy + Delta-G solvation = -2809.606241 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.29178 -40.15112 -36.92900 -35.69295 -34.83969 -32.45158 -31.67806 -29.38512 -28.04201 -26.68919 -25.53276 -23.04130 -21.67632 -20.38400 -18.70917 -18.02777 -17.83594 -17.07306 -16.81136 -16.41639 -16.25868 -15.72761 -15.54054 -14.97724 -14.37174 -14.25717 -13.97753 -13.78832 -13.45438 -13.32978 -12.95452 -12.67711 -12.50015 -12.19002 -11.73320 -11.64668 -11.43550 -10.91188 -10.63680 -9.85851 -9.52788 -8.78241 -8.22172 -6.36256 0.17897 1.27866 1.38786 1.41359 1.51144 1.80339 2.19034 2.31247 2.42123 2.98534 3.08317 3.42967 3.89134 4.36197 4.38405 4.40226 4.49563 4.63549 4.67897 4.72063 4.94469 5.02607 5.20093 5.35670 5.52598 5.77888 5.82818 6.04120 6.37863 6.57640 6.60599 6.71367 7.15848 7.31162 7.36009 8.85068 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.036268 B = 0.006203 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.843248 B = 4512.935814 C = 4826.482355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.584 5.584 3 C 0.261 3.739 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.965 3.035 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.264 1.264 12 C 0.561 3.439 13 O -0.581 6.581 14 C 0.049 3.951 15 C -0.271 4.271 16 C 0.326 3.674 17 N -0.826 5.826 18 N -0.357 5.357 19 N -0.354 5.354 20 C 0.104 3.896 21 H 0.086 0.914 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.004 0.996 25 H 0.037 0.963 26 H 0.268 0.732 27 H 0.200 0.800 28 H 0.410 0.590 29 H 0.424 0.576 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.436 -12.962 -2.195 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.314 5.314 3 C 0.140 3.860 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.566 5.566 8 Si 0.790 3.210 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.188 1.188 12 C 0.347 3.653 13 O -0.462 6.462 14 C -0.083 4.083 15 C -0.304 4.304 16 C 0.067 3.933 17 N -0.381 5.381 18 N -0.193 5.193 19 N -0.138 5.138 20 C -0.036 4.036 21 H 0.104 0.896 22 H 0.116 0.884 23 H 0.096 0.904 24 H 0.022 0.978 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.217 0.783 28 H 0.240 0.760 29 H 0.257 0.743 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.986 -13.858 -2.024 17.200 hybrid contribution 0.068 1.166 0.610 1.317 sum -9.918 -12.692 -1.415 16.169 Atomic orbital electron populations 1.22672 0.77689 1.04702 1.03177 1.47865 1.08720 1.05522 1.69325 1.18923 0.91329 0.79364 0.96388 1.21654 1.37028 1.06573 0.92894 0.93003 1.25786 0.94835 0.96338 1.01793 1.70030 1.38769 1.14862 1.32915 0.85448 0.78578 0.77582 0.79393 1.20741 1.19865 1.18791 1.17517 0.86366 0.83402 0.77985 1.90729 1.15421 1.87561 1.52457 1.21006 0.94436 0.86801 1.06017 1.22573 0.94317 0.96835 1.16701 1.19281 0.88197 0.90708 0.95073 1.41280 1.03624 1.10198 1.82997 1.77228 0.94990 1.13959 1.33134 1.48461 1.08711 1.01474 1.55163 1.22049 0.74999 1.03968 1.02630 0.89604 0.88385 0.90440 0.97797 0.94534 0.92309 0.78303 0.76001 0.74274 0.90666 0.87203 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.73 8.65 127.77 1.11 2.83 16 2 N -0.58 -24.95 2.86 -855.34 -2.44 -27.40 16 3 C 0.26 13.78 5.09 85.63 0.44 14.21 16 4 C -0.54 -30.92 9.39 25.60 0.24 -30.68 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.67 5.46 84.66 0.46 1.13 16 7 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 8 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 12 C 0.56 24.67 7.64 86.59 0.66 25.33 16 13 O -0.58 -30.04 14.47 -4.13 -0.06 -30.10 16 14 C 0.05 1.74 6.78 40.67 0.28 2.02 16 15 C -0.27 -7.46 8.74 22.59 0.20 -7.26 16 16 C 0.33 8.47 8.40 133.20 1.12 9.59 16 17 N -0.83 -12.81 9.15 -54.90 -0.50 -13.32 16 18 N -0.36 -11.17 12.56 -54.85 -0.69 -11.86 16 19 N -0.35 -12.12 4.06 -356.31 -1.45 -13.57 16 20 C 0.10 3.10 10.87 127.77 1.39 4.49 16 21 H 0.09 1.96 7.39 -2.38 -0.02 1.94 16 22 H 0.10 2.47 5.28 -2.39 -0.01 2.46 16 23 H 0.08 2.29 8.03 -2.39 -0.02 2.27 16 24 H 0.00 0.24 7.51 -2.39 -0.02 0.22 16 25 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 26 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.20 4.13 4.40 -2.91 -0.01 4.12 16 28 H 0.41 5.20 8.96 -92.71 -0.83 4.37 16 29 H 0.42 3.98 8.96 -92.70 -0.83 3.15 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.08 2.84 6.56 -2.38 -0.02 2.83 16 Total: -1.00 -74.84 275.84 2.57 -72.27 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -0.49 Total: 10.51 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 5.89 Total: 21.67 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -4.80 Total: -120.85 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.06 Total: -30.10 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -74.84 2.57 -72.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725182476.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.797 kcal (2) G-P(sol) polarization free energy of solvation -74.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds