Wall clock time and date at job start Sun Mar 29 2020 22:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34949 * 126.03490 * 2 1 4 4 C 1.35317 * 107.74217 * 180.14641 * 3 2 1 5 5 C 1.50701 * 126.03880 * 179.87744 * 4 3 2 6 6 O 1.45202 * 109.46859 * 269.71852 * 5 4 3 7 7 C 1.34230 * 116.99836 * 180.02562 * 6 5 4 8 8 O 1.20833 * 119.99930 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00262 * 180.27336 * 7 6 5 10 10 C 1.52996 * 109.47491 * 179.72204 * 9 7 6 11 11 C 1.50702 * 109.47159 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99766 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99802 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99900 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99548 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47467 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46715 * 120.00321 * 15 13 11 18 18 H 1.48498 * 109.46991 * 239.99741 * 15 13 11 19 19 C 1.39866 * 107.92383 * 359.61185 * 4 3 2 20 20 N 1.30844 * 108.19856 * 0.24168 * 19 4 3 21 21 H 1.08993 * 109.47175 * 270.25629 * 1 2 3 22 22 H 1.08996 * 109.47282 * 30.26385 * 1 2 3 23 23 H 1.09005 * 109.46863 * 150.25595 * 1 2 3 24 24 H 1.08001 * 126.13083 * 0.02562 * 3 2 1 25 25 H 1.08998 * 109.47259 * 149.71308 * 5 4 3 26 26 H 1.09004 * 109.46840 * 29.71087 * 5 4 3 27 27 H 1.09004 * 109.46801 * 299.72165 * 9 7 6 28 28 H 1.09000 * 109.47461 * 59.71633 * 9 7 6 29 29 H 1.09004 * 109.47066 * 299.99799 * 10 9 7 30 30 H 1.08994 * 109.47405 * 59.99969 * 10 9 7 31 31 H 0.96998 * 119.99342 * 179.97438 * 14 13 11 32 32 H 1.07997 * 125.90391 * 180.26372 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5453 -0.0071 6 8 5.1613 1.8213 -1.3773 7 6 6.2427 2.5960 -1.5566 8 8 6.8406 3.0295 -0.6002 9 6 6.7073 2.9306 -2.9506 10 6 7.9456 3.8259 -2.8744 11 6 8.4097 4.1610 -4.2685 12 1 7.8751 3.7737 -5.1233 13 6 9.5168 4.9621 -4.4526 14 7 10.1674 5.4340 -3.4116 15 14 10.0924 5.3768 -6.1806 16 1 9.1957 4.7275 -7.1703 17 1 10.0586 6.8488 -6.3736 18 1 11.4803 4.8844 -6.3715 19 6 3.5347 -0.7321 0.0036 20 7 2.2891 -1.1327 0.0056 21 1 -0.3633 0.0046 1.0276 22 1 -0.3634 0.8876 -0.5179 23 1 -0.3633 -0.8923 -0.5099 24 1 1.9282 2.1194 0.0004 25 1 5.5820 1.0365 0.5092 26 1 4.5441 2.4826 0.5024 27 1 6.9556 2.0114 -3.4812 28 1 5.9127 3.4539 -3.4826 29 1 7.6973 4.7451 -2.3438 30 1 8.7401 3.3027 -2.3425 31 1 10.9464 5.9972 -3.5412 32 1 4.4054 -1.3710 0.0072 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615219.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:06 Heat of formation + Delta-G solvation = -41.079031 kcal Electronic energy + Delta-G solvation = -15817.138525 eV Core-core repulsion = 12971.614330 eV Total energy + Delta-G solvation = -2845.524195 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.25329 -41.26867 -37.59650 -35.61050 -34.37505 -33.15285 -32.12906 -28.96258 -27.87886 -26.09297 -23.97429 -22.10518 -21.40765 -21.34910 -19.02785 -18.19179 -17.88540 -17.46023 -16.70685 -16.46497 -16.28542 -15.47224 -15.19858 -14.61073 -14.22741 -14.13781 -13.86447 -13.53159 -13.44690 -13.22326 -12.90282 -12.83469 -12.45972 -11.97885 -11.91219 -11.71010 -11.46325 -11.36127 -11.21929 -10.56386 -10.44593 -9.57461 -8.17972 -6.31385 0.79657 1.32446 1.35748 1.45415 1.45816 1.59544 1.63377 2.26287 2.47008 3.15835 3.53400 3.86583 4.05255 4.11827 4.27985 4.32891 4.45056 4.47111 4.50131 4.60430 4.70818 4.77830 4.98188 5.02682 5.46138 5.51624 5.55487 5.59519 5.83837 6.03212 6.16421 6.61687 6.84754 6.93653 7.38696 8.94851 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.057837 B = 0.003674 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.004317 B = 7618.532693 C = 7819.738277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.377 5.377 3 C 0.092 3.908 4 C -0.269 4.269 5 C 0.144 3.856 6 O -0.357 6.357 7 C 0.466 3.534 8 O -0.545 6.545 9 C -0.095 4.095 10 C 0.038 3.962 11 C -0.543 4.543 12 H 0.076 0.924 13 C -0.005 4.005 14 N -0.935 5.935 15 Si 0.974 3.026 16 H -0.254 1.254 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.061 3.939 20 N -0.330 5.330 21 H 0.090 0.910 22 H 0.116 0.884 23 H 0.092 0.908 24 H 0.210 0.790 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.114 0.886 29 H -0.009 1.009 30 H -0.010 1.010 31 H 0.264 0.736 32 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.257 -9.769 5.414 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.158 5.158 3 C -0.056 4.056 4 C -0.281 4.281 5 C 0.069 3.931 6 O -0.274 6.274 7 C 0.312 3.688 8 O -0.436 6.436 9 C -0.133 4.133 10 C 0.001 3.999 11 C -0.581 4.581 12 H 0.095 0.905 13 C -0.202 4.202 14 N -0.575 5.575 15 Si 0.798 3.202 16 H -0.178 1.178 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.125 4.125 20 N -0.152 5.152 21 H 0.109 0.891 22 H 0.134 0.866 23 H 0.110 0.890 24 H 0.226 0.774 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.010 0.990 30 H 0.008 0.992 31 H 0.072 0.928 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -20.973 -10.593 5.782 24.197 hybrid contribution 1.332 1.074 -0.215 1.725 sum -19.641 -9.519 5.567 22.525 Atomic orbital electron populations 1.22273 0.71445 1.06196 1.04933 1.48907 1.08249 1.03251 1.55377 1.22908 0.90153 0.94917 0.97656 1.19730 0.93823 0.93835 1.20728 1.21057 0.93912 0.98313 0.79771 1.86615 1.44001 1.63432 1.33330 1.24401 0.77072 0.74009 0.93364 1.90625 1.56499 1.51813 1.44627 1.21499 0.99935 1.02812 0.89021 1.18802 0.91491 0.93421 0.96228 1.21688 1.12525 1.30787 0.93072 0.90547 1.26096 0.96729 0.95705 1.01718 1.70166 1.20168 1.35029 1.32178 0.85267 0.78176 0.77894 0.78872 1.17752 1.20587 1.20661 1.24146 0.95753 0.94715 0.97857 1.77332 1.02047 1.09656 1.26167 0.89131 0.86586 0.88957 0.77351 0.90757 0.90298 0.86952 0.86758 0.99033 0.99157 0.92772 0.78530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.47 127.77 1.47 2.22 16 2 N -0.38 -6.92 4.01 -369.56 -1.48 -8.40 16 3 C 0.09 1.68 11.40 83.54 0.95 2.64 16 4 C -0.27 -6.27 5.74 -20.14 -0.12 -6.39 16 5 C 0.14 3.87 5.94 71.24 0.42 4.29 16 6 O -0.36 -11.66 10.20 -51.41 -0.52 -12.18 16 7 C 0.47 18.46 7.96 71.23 0.57 19.02 16 8 O -0.55 -25.47 15.73 21.94 0.35 -25.13 16 9 C -0.10 -3.88 5.75 29.85 0.17 -3.71 16 10 C 0.04 2.06 4.26 29.85 0.13 2.19 16 11 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 12 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 13 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 14 N -0.94 -58.26 13.29 21.45 0.28 -57.98 16 15 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 16 H -0.25 -10.60 7.11 99.48 0.71 -9.90 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 C 0.06 1.43 11.96 85.23 1.02 2.45 16 20 N -0.33 -7.97 12.58 -57.02 -0.72 -8.69 16 21 H 0.09 0.49 8.14 -2.39 -0.02 0.48 16 22 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 23 H 0.09 0.74 8.14 -2.38 -0.02 0.73 16 24 H 0.21 2.26 8.06 -2.91 -0.02 2.23 16 25 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 26 H 0.08 2.01 8.13 -2.38 -0.02 1.99 16 27 H 0.11 4.11 8.14 -2.38 -0.02 4.09 16 28 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 29 H -0.01 -0.53 8.10 -2.38 -0.02 -0.55 16 30 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 31 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 32 H 0.20 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -76.49 291.07 6.34 -70.15 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.11 Total: 3.70 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 5.31 Total: -7.33 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -1.92 Total: -75.07 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.18 Total: -37.31 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -76.49 6.34 -70.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615219.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.070 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds