Wall clock time and date at job start Sun Mar 29 2020 22:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47232 * 2 1 4 4 N 1.28597 * 124.61755 * 90.02724 * 3 2 1 5 5 C 1.31384 * 108.71793 * 179.97438 * 4 3 2 6 6 C 1.50698 * 127.04846 * 180.02562 * 5 4 3 7 7 C 1.39673 * 105.89841 * 359.97438 * 5 4 3 8 8 C 1.50696 * 127.04881 * 180.02562 * 7 5 4 9 9 N 1.46505 * 109.47040 * 89.99928 * 8 7 5 10 10 C 1.34780 * 119.99647 * 179.97438 * 9 8 7 11 11 O 1.21680 * 120.00477 * 0.02562 * 10 9 8 12 12 C 1.46378 * 119.99523 * 179.97438 * 10 9 8 13 13 H 1.07996 * 120.00126 * 0.02562 * 12 10 9 14 14 C 1.40049 * 120.00012 * 180.02562 * 12 10 9 15 15 N 1.30679 * 119.99824 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00188 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47365 * 59.99774 * 16 14 12 18 18 H 1.48497 * 109.47455 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47103 * 299.99590 * 16 14 12 20 20 N 1.28596 * 124.61789 * 269.98345 * 3 2 1 21 21 H 1.08997 * 109.47103 * 59.99883 * 1 2 3 22 22 H 1.08993 * 109.47331 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46874 * 300.00440 * 1 2 3 24 24 H 1.08995 * 109.47724 * 239.99764 * 2 1 3 25 25 H 1.09004 * 109.47026 * 119.99731 * 2 1 3 26 26 H 1.09005 * 109.47103 * 89.97683 * 6 5 4 27 27 H 1.08998 * 109.46868 * 209.97047 * 6 5 4 28 28 H 1.08997 * 109.47630 * 329.97438 * 6 5 4 29 29 H 1.09001 * 109.47122 * 209.99917 * 8 7 5 30 30 H 1.09001 * 109.47475 * 329.99816 * 8 7 5 31 31 H 0.96992 * 119.99979 * 0.02562 * 9 8 7 32 32 H 0.96996 * 119.99721 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2624 2.0698 1.0583 5 6 2.6839 3.2610 0.6984 6 6 3.0860 4.3945 1.6064 7 6 2.6842 3.2609 -0.6984 8 6 3.0861 4.3945 -1.6063 9 7 4.5183 4.3005 -1.9002 10 6 5.1037 5.2147 -2.6990 11 8 4.4428 6.1185 -3.1756 12 6 6.5347 5.1211 -2.9922 13 1 7.1213 4.3193 -2.5688 14 6 7.1432 6.0714 -3.8217 15 7 6.4332 7.0413 -4.3344 16 14 8.9692 5.9515 -4.1965 17 1 9.2533 4.6567 -4.8658 18 1 9.3652 7.0682 -5.0917 19 1 9.7408 6.0341 -2.9304 20 7 2.2622 2.0699 -1.0583 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 4.1516 4.3245 1.8250 27 1 2.8776 5.3450 1.1151 28 1 2.5197 4.3341 2.5358 29 1 2.5197 4.3339 -2.5357 30 1 2.8776 5.3449 -1.1151 31 1 5.0450 3.5799 -1.5206 32 1 6.8546 7.6993 -4.9092 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819598910.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:09 Heat of formation + Delta-G solvation = 59.289354 kcal Electronic energy + Delta-G solvation = -16421.267307 eV Core-core repulsion = 13612.388164 eV Total energy + Delta-G solvation = -2808.879144 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -43.38525 -37.28173 -35.32552 -33.44785 -32.59994 -32.26450 -30.93101 -28.01884 -27.14084 -25.34444 -23.14909 -21.07457 -20.70493 -19.61818 -17.44399 -17.05189 -16.31410 -15.29336 -14.82171 -14.47526 -13.98135 -13.82329 -13.62226 -13.30114 -12.87011 -12.66018 -12.49417 -12.32395 -12.07855 -11.64806 -11.44121 -11.16180 -10.95582 -10.67206 -10.58229 -10.41991 -10.23490 -9.93213 -8.88840 -8.81198 -7.57739 -7.48084 -6.15170 -4.60454 1.95081 2.37153 2.54141 3.18795 3.23479 3.25624 4.12092 4.16544 4.62252 4.62484 4.68835 4.88193 4.95925 5.12660 5.21155 5.38211 5.42175 5.58058 5.74325 5.76912 5.86598 5.98742 6.18023 6.32680 6.56235 6.58154 6.87475 7.46884 7.94635 8.09872 8.36127 8.53283 9.05782 9.55791 10.63052 10.81311 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.040114 B = 0.004941 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.849936 B = 5666.041512 C = 5787.466263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.163 5.163 4 N -0.298 5.298 5 C 0.013 3.987 6 C -0.063 4.063 7 C 0.003 3.997 8 C 0.221 3.779 9 N -0.760 5.760 10 C 0.557 3.443 11 O -0.580 6.580 12 C -0.544 4.544 13 H 0.067 0.933 14 C 0.088 3.912 15 N -0.768 5.768 16 Si 0.908 3.092 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.268 1.268 20 N -0.276 5.276 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.380 0.620 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 -11.545 10.087 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.020 3.980 3 N -0.063 5.063 4 N -0.140 5.140 5 C -0.150 4.150 6 C -0.122 4.122 7 C -0.160 4.160 8 C 0.094 3.906 9 N -0.417 5.417 10 C 0.361 3.639 11 O -0.463 6.463 12 C -0.581 4.581 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.397 5.397 16 Si 0.733 3.267 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.193 1.193 20 N -0.119 5.119 21 H 0.086 0.914 22 H 0.101 0.899 23 H 0.084 0.916 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.212 0.788 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.523 -12.031 9.603 17.596 hybrid contribution 1.379 0.209 -0.006 1.395 sum -7.144 -11.823 9.597 16.820 Atomic orbital electron populations 1.22174 0.93454 1.03547 1.03646 1.21874 0.95768 0.74891 1.05472 1.47951 1.45779 1.13141 0.99471 1.73916 1.18811 1.05318 1.15979 1.23109 1.03760 0.94195 0.93977 1.20071 1.01919 0.93228 0.96966 1.23387 1.04383 0.94346 0.93881 1.19013 0.85616 0.90791 0.95151 1.46152 1.06332 1.33293 1.55903 1.18200 0.88362 0.80108 0.77186 1.90601 1.65564 1.35482 1.54629 1.20827 0.92414 1.13092 1.31771 0.91521 1.25691 0.99258 0.94083 0.94108 1.70012 1.36208 1.10080 1.23375 0.86436 0.83095 0.78373 0.78836 1.19348 1.20563 1.19290 1.74052 1.17077 1.05257 1.15468 0.91376 0.89852 0.91574 0.87563 0.87728 0.90257 0.89864 0.91090 0.91713 0.91050 0.78840 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 2 C 0.14 1.32 7.26 -4.04 -0.03 1.29 16 3 N -0.16 -2.41 3.95 -10.62 -0.04 -2.45 16 4 N -0.30 -4.65 12.05 33.71 0.41 -4.25 16 5 C 0.01 0.21 7.35 -82.25 -0.60 -0.40 16 6 C -0.06 -0.81 10.34 36.00 0.37 -0.44 16 7 C 0.00 0.06 6.72 -82.25 -0.55 -0.49 16 8 C 0.22 4.51 6.12 -5.19 -0.03 4.48 16 9 N -0.76 -17.65 5.54 -62.90 -0.35 -18.00 16 10 C 0.56 16.03 7.75 -12.98 -0.10 15.93 16 11 O -0.58 -18.83 15.02 5.21 0.08 -18.75 16 12 C -0.54 -15.53 9.54 -35.63 -0.34 -15.87 16 13 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 14 C 0.09 2.48 5.50 -17.36 -0.10 2.39 16 15 N -0.77 -23.12 11.83 55.55 0.66 -22.46 16 16 Si 0.91 20.28 29.56 -169.99 -5.02 15.25 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 N -0.28 -4.82 12.05 33.71 0.41 -4.41 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.05 7.50 -51.93 -0.39 0.66 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.07 1.43 7.50 -51.93 -0.39 1.04 16 31 H 0.38 8.15 8.44 -40.82 -0.34 7.81 16 32 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 286.86 15.07 4.32 4.32 Total: -1.00 -35.88 286.86 -4.60 -40.48 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.05 Total: 4.33 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.00 Total: 5.93 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 1.08 Total: -51.57 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.08 Total: -18.75 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.88 -4.60 -40.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819598910.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.772 kcal (2) G-P(sol) polarization free energy of solvation -35.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds