Wall clock time and date at job start Sun Mar 29 2020 22:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47285 * 2 1 4 4 C 1.34965 * 125.97912 * 125.00104 * 3 2 1 5 5 C 1.35242 * 107.85628 * 180.20625 * 4 3 2 6 6 C 1.40397 * 107.86857 * 359.64252 * 5 4 3 7 7 N 1.40202 * 125.97193 * 180.14808 * 6 5 4 8 8 C 1.34779 * 119.99946 * 0.22529 * 7 6 5 9 9 O 1.21600 * 120.00067 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00224 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00131 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.46978 * 180.02562 * 11 10 8 13 13 H 1.07993 * 120.00246 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00053 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99747 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00254 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46987 * 90.00119 * 16 14 12 18 18 H 1.48497 * 109.47377 * 210.00354 * 16 14 12 19 19 H 1.48501 * 109.47167 * 330.00381 * 16 14 12 20 20 N 1.31203 * 108.05748 * 0.35865 * 6 5 4 21 21 H 1.09001 * 109.47171 * 300.00235 * 1 2 3 22 22 H 1.08993 * 109.47178 * 60.00156 * 1 2 3 23 23 H 1.09007 * 109.47072 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47171 * 239.99765 * 2 1 3 25 25 H 1.09003 * 109.47228 * 119.99849 * 2 1 3 26 26 H 1.08002 * 126.06683 * 359.93657 * 4 3 2 27 27 H 1.08005 * 126.06509 * 179.74504 * 5 4 3 28 28 H 0.96997 * 119.99959 * 180.22636 * 7 6 5 29 29 H 0.96997 * 119.99675 * 0.02562 * 10 8 7 30 30 H 1.08998 * 109.47466 * 300.00330 * 11 10 8 31 31 H 1.09005 * 109.46899 * 60.00477 * 11 10 8 32 32 H 0.97002 * 119.99822 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8733 1.9199 0.8947 5 6 3.0707 3.2134 0.5527 6 6 2.3136 3.4745 -0.6004 7 7 2.2430 4.6991 -1.2794 8 6 2.9478 5.7581 -0.8342 9 8 3.6453 5.6514 0.1562 10 7 2.8804 6.9352 -1.4872 11 6 3.6461 8.0865 -1.0029 12 6 3.3973 9.2695 -1.9026 13 1 2.7349 9.1736 -2.7501 14 6 4.0155 10.4745 -1.6438 15 7 4.8227 10.5912 -0.6120 16 14 3.7078 11.9408 -2.7594 17 1 2.5442 12.7123 -2.2532 18 1 4.9103 12.8119 -2.7750 19 1 3.4241 11.4639 -4.1368 20 7 1.6801 2.3736 -0.9289 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.3172 1.4098 1.7368 27 1 3.7005 3.9197 1.0733 28 1 1.6870 4.7841 -2.0696 29 1 2.3244 7.0202 -2.2774 30 1 3.3328 8.3302 0.0122 31 1 4.7087 7.8437 -1.0068 32 1 5.2579 11.4388 -0.4301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824949349.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:46 Heat of formation + Delta-G solvation = 51.567654 kcal Electronic energy + Delta-G solvation = -16102.639593 eV Core-core repulsion = 13293.425612 eV Total energy + Delta-G solvation = -2809.213982 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.09963 -39.18628 -35.16905 -34.14936 -33.40335 -32.24608 -29.94492 -28.80384 -27.07936 -23.77540 -22.73497 -21.44807 -20.49896 -19.83494 -17.93246 -17.24930 -16.17507 -15.85061 -15.37653 -14.84674 -14.65276 -14.24520 -14.06048 -13.37461 -13.11004 -12.83258 -12.53952 -12.23979 -11.98584 -11.96596 -11.56629 -10.96392 -10.90994 -10.48392 -10.44674 -10.28363 -9.39042 -9.36213 -8.75433 -8.62682 -8.12460 -7.70081 -6.16086 -4.22803 2.02653 2.32003 3.03204 3.25625 3.29506 3.32853 3.37619 3.99658 4.32522 4.46476 4.77603 4.82435 4.95825 5.05526 5.20340 5.36024 5.39158 5.67011 5.91389 5.93175 6.06909 6.54909 6.95015 7.15775 7.26124 7.43579 7.45776 7.53693 7.72546 7.95653 8.10925 8.70841 8.85186 9.21148 9.44250 10.94095 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.076650 B = 0.003970 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.210819 B = 7050.737502 C = 7341.659597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 N -0.378 5.378 4 C 0.053 3.947 5 C -0.261 4.261 6 C 0.328 3.672 7 N -0.656 5.656 8 C 0.700 3.300 9 O -0.576 6.576 10 N -0.719 5.719 11 C 0.266 3.734 12 C -0.543 4.543 13 H 0.064 0.936 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 N -0.337 5.337 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.173 0.827 27 H 0.175 0.825 28 H 0.407 0.593 29 H 0.389 0.611 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.903 -18.691 0.442 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 N -0.163 5.163 4 C -0.092 4.092 5 C -0.292 4.292 6 C 0.071 3.929 7 N -0.308 5.308 8 C 0.399 3.601 9 O -0.453 6.453 10 N -0.372 5.372 11 C 0.146 3.854 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 N -0.168 5.168 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.190 0.810 27 H 0.192 0.808 28 H 0.241 0.759 29 H 0.222 0.778 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.916 -19.192 0.653 20.411 hybrid contribution -0.119 1.248 -0.750 1.461 sum -7.035 -17.944 -0.097 19.274 Atomic orbital electron populations 1.22058 0.94184 1.02417 1.03659 1.21557 0.95802 0.77650 1.03293 1.48139 1.37155 1.09360 1.21663 1.22567 0.95614 0.94689 0.96297 1.21978 1.09813 0.96559 1.00850 1.18918 0.95416 0.85823 0.92713 1.41917 1.50185 1.07177 1.31502 1.15958 0.80454 0.80132 0.83563 1.90803 1.44257 1.83068 1.27163 1.45739 1.50585 1.09833 1.30993 1.19077 0.91060 0.79878 0.95420 1.21212 1.29178 0.95139 1.12658 0.91830 1.24939 0.94694 0.98856 0.95492 1.69977 1.28905 1.26016 1.27318 0.86395 0.77810 0.81921 0.80652 1.20468 1.21013 1.19747 1.77233 1.27374 0.96309 1.15851 0.92134 0.91120 0.91078 0.90274 0.88855 0.81000 0.80797 0.75873 0.77793 0.95379 0.95357 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.10 37.16 0.38 -0.89 16 2 C 0.14 1.12 7.23 -4.04 -0.03 1.09 16 3 N -0.38 -4.87 3.68 -61.38 -0.23 -5.09 16 4 C 0.05 0.69 11.44 -17.24 -0.20 0.49 16 5 C -0.26 -4.46 9.61 -39.84 -0.38 -4.85 16 6 C 0.33 5.77 8.11 -154.36 -1.25 4.52 16 7 N -0.66 -11.31 5.46 -15.50 -0.08 -11.39 16 8 C 0.70 14.70 8.53 -86.92 -0.74 13.96 16 9 O -0.58 -14.01 13.47 5.28 0.07 -13.93 16 10 N -0.72 -15.28 5.55 -66.41 -0.37 -15.65 16 11 C 0.27 7.02 5.43 -5.20 -0.03 6.99 16 12 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 13 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.88 -25.91 13.29 55.43 0.74 -25.17 16 16 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 N -0.34 -5.37 12.43 31.44 0.39 -4.98 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 26 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.17 3.34 5.91 -52.48 -0.31 3.03 16 28 H 0.41 5.71 8.84 -40.82 -0.36 5.35 16 29 H 0.39 7.02 8.34 -40.82 -0.34 6.68 16 30 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 283.87 15.07 4.28 4.28 Total: -1.00 -33.48 283.87 -6.82 -40.30 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -3.92 Total: 7.87 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -2.67 Total: 8.01 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.45 Total: -62.29 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.07 Total: -13.93 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.48 -6.82 -40.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824949349.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.868 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds