Wall clock time and date at job start Sun Mar 29 2020 21:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47156 * 2 1 4 4 C 1.35052 * 124.87812 * 124.99872 * 3 2 1 5 5 C 1.35343 * 107.23799 * 179.70796 * 4 3 2 6 6 C 1.41548 * 105.50405 * 0.41162 * 5 4 3 7 7 C 1.47586 * 126.52363 * 179.84351 * 6 5 4 8 8 O 1.21494 * 119.99928 * 359.71638 * 7 6 5 9 9 O 1.34723 * 120.00111 * 179.71977 * 7 6 5 10 10 C 1.45201 * 117.00240 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47014 * 30.00150 * 10 9 7 12 12 C 1.52992 * 109.46912 * 269.99625 * 10 9 7 13 13 C 1.50697 * 109.46869 * 149.99496 * 10 9 7 14 14 H 1.08001 * 120.00711 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99694 * 179.97438 * 13 10 9 16 16 N 1.31522 * 120.00171 * 0.02562 * 15 13 10 17 17 Si 1.86810 * 120.00116 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.46987 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47077 * 119.99932 * 17 15 13 20 20 H 1.48496 * 109.46990 * 240.00082 * 17 15 13 21 21 N 1.28465 * 124.87901 * 304.97932 * 3 2 1 22 22 H 1.08997 * 109.47305 * 59.99620 * 1 2 3 23 23 H 1.09007 * 109.47047 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46957 * 299.99431 * 1 2 3 25 25 H 1.08999 * 109.46726 * 239.99982 * 2 1 3 26 26 H 1.08998 * 109.46861 * 120.00086 * 2 1 3 27 27 H 1.07996 * 126.38037 * 359.97438 * 4 3 2 28 28 H 1.08003 * 127.24908 * 180.26889 * 5 4 3 29 29 H 1.09003 * 109.47332 * 179.97438 * 12 10 9 30 30 H 1.09007 * 109.47553 * 299.99840 * 12 10 9 31 31 H 1.09005 * 109.47383 * 59.99769 * 12 10 9 32 32 H 0.97000 * 119.99914 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8749 1.8975 0.9076 5 6 3.0882 3.1901 0.5678 6 6 2.3011 3.4124 -0.5875 7 6 2.1871 4.6751 -1.3430 8 8 2.8040 5.6573 -0.9812 9 8 1.3990 4.7387 -2.4338 10 6 1.3353 6.0125 -3.1278 11 1 2.2805 6.5412 -3.0043 12 6 0.1995 6.8550 -2.5441 13 6 1.0814 5.7736 -4.5939 14 1 0.9778 4.7653 -4.9668 15 6 0.9803 6.8423 -5.4591 16 7 1.1060 8.0702 -5.0050 17 14 0.6648 6.5463 -7.2764 18 1 0.5638 5.0866 -7.5299 19 1 -0.6048 7.2070 -7.6725 20 1 1.7852 7.1099 -8.0715 21 7 1.6936 2.2752 -0.8635 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.3120 1.3749 1.7456 28 1 3.7231 3.9027 1.0733 29 1 0.1520 7.8115 -3.0647 30 1 -0.7457 6.3263 -2.6677 31 1 0.3832 7.0278 -1.4836 32 1 1.0353 8.8221 -5.6138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842717553.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:59 Heat of formation + Delta-G solvation = -34.139010 kcal Electronic energy + Delta-G solvation = -16569.012505 eV Core-core repulsion = 13723.789252 eV Total energy + Delta-G solvation = -2845.223253 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.66165 -41.03442 -37.60323 -35.53048 -35.30436 -32.03878 -31.59921 -30.85848 -27.49521 -26.43171 -23.99167 -22.73279 -22.28153 -20.96603 -19.09940 -18.45441 -18.10831 -17.39128 -17.03732 -16.47844 -16.24991 -15.30487 -14.97712 -14.57252 -14.33986 -14.15878 -13.90166 -13.35829 -13.18991 -13.01623 -12.96288 -12.83146 -12.41749 -12.30205 -12.16334 -11.84066 -11.66747 -11.61831 -11.01609 -10.62424 -10.30331 -10.09149 -8.30204 -6.47279 0.33129 1.17095 1.39422 1.42067 1.46955 1.57129 2.08828 2.15712 2.42142 2.99894 3.37075 3.94507 3.96951 4.07148 4.27911 4.38801 4.49094 4.67616 4.69997 4.75949 4.78422 4.82874 4.89662 5.09745 5.24506 5.33069 5.45176 5.58066 5.84082 5.93277 6.01818 6.55201 6.75874 7.02344 7.24207 8.78333 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.005706 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.869615 B = 4906.219570 C = 5422.921250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.273 5.273 4 C 0.011 3.989 5 C -0.197 4.197 6 C -0.039 4.039 7 C 0.534 3.466 8 O -0.543 6.543 9 O -0.353 6.353 10 C 0.214 3.786 11 H 0.011 0.989 12 C -0.140 4.140 13 C -0.549 4.549 14 H 0.063 0.937 15 C 0.017 3.983 16 N -0.916 5.916 17 Si 0.987 3.013 18 H -0.266 1.266 19 H -0.268 1.268 20 H -0.272 1.272 21 N -0.263 5.263 22 H 0.041 0.959 23 H 0.110 0.890 24 H 0.058 0.942 25 H 0.103 0.897 26 H 0.155 0.845 27 H 0.244 0.756 28 H 0.171 0.829 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.023 0.977 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.987 -18.155 12.322 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.064 5.064 4 C -0.131 4.131 5 C -0.225 4.225 6 C -0.195 4.195 7 C 0.379 3.621 8 O -0.433 6.433 9 O -0.269 6.269 10 C 0.161 3.839 11 H 0.028 0.972 12 C -0.198 4.198 13 C -0.587 4.587 14 H 0.081 0.919 15 C -0.182 4.182 16 N -0.554 5.554 17 Si 0.809 3.191 18 H -0.191 1.191 19 H -0.193 1.193 20 H -0.198 1.198 21 N -0.102 5.102 22 H 0.060 0.940 23 H 0.128 0.872 24 H 0.077 0.923 25 H 0.121 0.879 26 H 0.173 0.827 27 H 0.260 0.740 28 H 0.188 0.812 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.354 -18.256 11.565 21.614 hybrid contribution 0.450 1.085 -0.390 1.238 sum 0.804 -17.170 11.175 20.502 Atomic orbital electron populations 1.22086 0.93501 1.04684 1.02266 1.22581 0.96563 0.74318 1.07674 1.46367 1.31322 1.11278 1.17474 1.23642 0.97077 0.93802 0.98629 1.22056 1.04706 0.98487 0.97226 1.20909 1.06418 0.91260 1.00880 1.20351 0.75886 0.86891 0.78990 1.90736 1.46089 1.37858 1.68645 1.86623 1.60751 1.41383 1.38100 1.20470 0.95320 0.77402 0.90684 0.97158 1.21980 0.98162 1.02288 0.97391 1.21282 1.52059 0.94315 0.91017 0.91893 1.25860 0.93753 0.94088 1.04545 1.70023 1.49037 0.99005 1.37302 0.85085 0.78338 0.78677 0.76960 1.19058 1.19275 1.19753 1.73649 1.21749 0.98365 1.16435 0.93963 0.87152 0.92322 0.87925 0.82691 0.73966 0.81190 0.89571 0.93733 0.95785 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.02 71.98 0.72 -1.54 16 2 C 0.11 1.22 7.12 86.38 0.61 1.83 16 3 N -0.27 -6.26 3.41 -347.96 -1.19 -7.45 16 4 C 0.01 0.20 11.40 83.53 0.95 1.15 16 5 C -0.20 -5.75 10.81 22.42 0.24 -5.50 16 6 C -0.04 -1.58 7.17 42.43 0.30 -1.27 16 7 C 0.53 27.11 7.94 70.29 0.56 27.67 16 8 O -0.54 -29.57 16.18 19.86 0.32 -29.24 16 9 O -0.35 -19.82 9.87 -56.34 -0.56 -20.38 16 10 C 0.21 12.88 2.56 29.84 0.08 12.95 16 11 H 0.01 0.70 7.16 -2.39 -0.02 0.68 16 12 C -0.14 -7.82 9.33 71.98 0.67 -7.15 16 13 C -0.55 -33.44 8.90 25.60 0.23 -33.21 16 14 H 0.06 3.81 7.81 -2.91 -0.02 3.79 16 15 C 0.02 0.99 5.30 84.65 0.45 1.44 16 16 N -0.92 -54.44 11.32 21.45 0.24 -54.20 16 17 Si 0.99 44.68 29.54 68.60 2.03 46.71 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 21 N -0.26 -9.39 11.68 -48.21 -0.56 -9.95 16 22 H 0.04 0.89 8.08 -2.39 -0.02 0.87 16 23 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 24 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.16 0.22 8.04 -2.39 -0.02 0.20 16 27 H 0.24 1.36 8.06 -2.91 -0.02 1.33 16 28 H 0.17 4.50 8.06 -2.91 -0.02 4.48 16 29 H 0.09 5.02 6.07 -2.39 -0.01 5.00 16 30 H 0.04 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -80.70 286.16 6.22 -74.49 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.11 Total: 3.66 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 4.82 Total: -3.64 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -1.51 Total: -71.60 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -0.23 Total: -49.62 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -80.70 6.22 -74.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842717553.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.349 kcal (2) G-P(sol) polarization free energy of solvation -80.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds