Wall clock time and date at job start Sun Mar 29 2020 22:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.35964 * 126.07178 * 125.00007 * 3 2 1 5 5 C 1.35709 * 107.55297 * 180.02562 * 4 3 2 6 6 N 1.40796 * 126.06930 * 180.02562 * 5 4 3 7 7 C 1.46496 * 120.00265 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47180 * 179.97438 * 7 6 5 9 9 O 1.21289 * 119.99925 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00107 * 179.97438 * 8 7 6 11 11 C 1.37099 * 120.00025 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99917 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99631 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00027 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99562 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47332 * 89.99810 * 15 13 11 17 17 H 1.48502 * 109.46964 * 209.99791 * 15 13 11 18 18 H 1.48500 * 109.47166 * 329.99819 * 15 13 11 19 19 C 1.40221 * 107.86181 * 359.97438 * 5 4 3 20 20 N 1.30854 * 108.36804 * 359.72054 * 19 5 4 21 21 H 1.09000 * 109.47050 * 299.99945 * 1 2 3 22 22 H 1.09001 * 109.46801 * 60.00058 * 1 2 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 120.00226 * 2 1 3 25 25 H 1.09000 * 109.47050 * 240.00054 * 2 1 3 26 26 H 1.07996 * 126.22458 * 359.96075 * 4 3 2 27 27 H 0.97003 * 120.00025 * 359.97438 * 6 5 4 28 28 H 1.08993 * 109.47483 * 299.99902 * 7 6 5 29 29 H 1.09004 * 109.46606 * 60.00228 * 7 6 5 30 30 H 0.97000 * 119.99837 * 0.02562 * 10 8 7 31 31 H 0.97002 * 119.99322 * 179.97438 * 14 13 11 32 32 H 1.08006 * 125.81193 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8795 1.9259 0.9002 5 6 3.0749 3.2217 0.5475 6 7 3.8988 4.1475 1.2156 7 6 4.0131 5.5201 0.7164 8 6 4.9479 6.3011 1.6037 9 8 5.4678 5.7639 2.5588 10 7 5.2069 7.5962 1.3353 11 6 6.0577 8.3066 2.1422 12 1 6.5207 7.8283 2.9927 13 6 6.3243 9.6420 1.8658 14 7 5.7613 10.2238 0.8307 15 14 7.4841 10.6097 2.9648 16 1 8.8721 10.4840 2.4522 17 1 7.0851 12.0401 2.9677 18 1 7.4170 10.0743 4.3484 19 6 2.3115 3.4745 -0.6012 20 7 1.6859 2.3736 -0.9312 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 3.3259 1.4197 1.7433 27 1 4.3908 3.8766 2.0065 28 1 4.4045 5.5054 -0.3007 29 1 3.0301 5.9912 0.7207 30 1 4.7913 8.0257 0.5713 31 1 5.9472 11.1562 0.6381 32 1 2.2532 4.4164 -1.1267 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902071644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:34 Heat of formation + Delta-G solvation = 43.133745 kcal Electronic energy + Delta-G solvation = -15943.104680 eV Core-core repulsion = 13133.524976 eV Total energy + Delta-G solvation = -2809.579703 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.83827 -38.32654 -35.30397 -34.09650 -33.43304 -31.32207 -30.13814 -28.75495 -26.11167 -24.10124 -23.81863 -20.90797 -20.11827 -19.13295 -17.95578 -17.20032 -16.18043 -15.42504 -15.04841 -14.67189 -14.43928 -14.24610 -14.05474 -13.72810 -13.54555 -12.74354 -12.36304 -12.24416 -12.06202 -11.98676 -11.59577 -11.53723 -11.10385 -10.52406 -10.42730 -10.27115 -9.76891 -9.57125 -9.17857 -8.53475 -8.04624 -6.74154 -6.47170 -3.88562 2.06117 2.60514 3.14710 3.21429 3.24426 3.29991 3.82474 3.93496 4.19449 4.54869 4.82110 4.96905 4.99712 5.09648 5.21611 5.24836 5.41170 5.57004 5.78315 5.87558 5.88593 6.01706 6.06643 6.18525 6.61311 7.19512 7.50318 7.71150 7.88195 8.01404 8.41462 8.52543 9.10457 9.46048 9.95043 10.70107 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.081766 B = 0.003814 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.360267 B = 7340.037994 C = 7600.751706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 N -0.376 5.376 4 C -0.044 4.044 5 C 0.079 3.921 6 N -0.727 5.727 7 C 0.127 3.873 8 C 0.433 3.567 9 O -0.595 6.595 10 N -0.554 5.554 11 C -0.303 4.303 12 H 0.104 0.896 13 C 0.025 3.975 14 N -0.898 5.898 15 Si 0.932 3.068 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.269 1.269 19 C 0.006 3.994 20 N -0.279 5.279 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.167 0.833 27 H 0.408 0.592 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.395 0.605 31 H 0.273 0.727 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.109 -14.770 -3.027 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.020 3.980 3 N -0.166 5.166 4 C -0.191 4.191 5 C -0.030 4.030 6 N -0.367 5.367 7 C -0.002 4.002 8 C 0.218 3.782 9 O -0.481 6.481 10 N -0.190 5.190 11 C -0.433 4.433 12 H 0.122 0.878 13 C -0.178 4.178 14 N -0.538 5.538 15 Si 0.759 3.241 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.194 1.194 19 C -0.183 4.183 20 N -0.102 5.102 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.184 0.816 27 H 0.246 0.754 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.228 0.772 31 H 0.083 0.917 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.591 -15.419 -3.372 17.970 hybrid contribution 1.098 1.179 0.894 1.843 sum -7.493 -14.239 -2.478 16.280 Atomic orbital electron populations 1.22074 0.94300 1.02417 1.03553 1.21489 0.95532 0.77789 1.03202 1.48156 1.37284 1.09606 1.21551 1.21590 1.03055 0.94229 1.00263 1.17772 0.99015 0.89955 0.96224 1.43587 1.52125 1.07824 1.33191 1.20729 0.99067 0.83209 0.97208 1.19837 0.86748 0.83485 0.88083 1.90489 1.55897 1.69653 1.32060 1.41809 1.41173 1.08496 1.27506 1.19720 1.21644 0.92654 1.09237 0.87810 1.25294 0.98325 0.96991 0.97169 1.69613 1.43520 1.13416 1.27280 0.85833 0.79804 0.78365 0.80147 1.20327 1.20845 1.19364 1.23564 0.99160 0.98053 0.97507 1.77074 1.23029 0.96561 1.13525 0.92116 0.91217 0.91095 0.89044 0.90414 0.81560 0.75415 0.91434 0.91447 0.77160 0.91705 0.80331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.10 37.16 0.38 -0.92 16 2 C 0.14 1.21 7.24 -4.04 -0.03 1.18 16 3 N -0.38 -4.86 3.71 -61.00 -0.23 -5.08 16 4 C -0.04 -0.60 11.52 -16.63 -0.19 -0.80 16 5 C 0.08 1.24 6.96 -83.90 -0.58 0.65 16 6 N -0.73 -12.56 5.77 -59.97 -0.35 -12.90 16 7 C 0.13 2.27 6.11 -5.20 -0.03 2.24 16 8 C 0.43 10.07 7.85 -10.98 -0.09 9.99 16 9 O -0.60 -15.76 15.24 5.55 0.08 -15.67 16 10 N -0.55 -13.83 5.29 -10.96 -0.06 -13.89 16 11 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 13 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 14 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 15 Si 0.93 20.76 29.55 -169.99 -5.02 15.74 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 C 0.01 0.08 11.34 -17.22 -0.20 -0.11 16 20 N -0.28 -4.16 12.42 30.70 0.38 -3.77 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 0.57 8.07 -51.93 -0.42 0.15 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 27 H 0.41 7.45 7.57 -40.82 -0.31 7.15 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.39 9.36 7.90 -40.82 -0.32 9.03 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.18 2.30 7.90 -52.48 -0.41 1.88 16 LS Contribution 286.47 15.07 4.32 4.32 Total: -1.00 -31.67 286.47 -5.06 -36.74 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -3.94 Total: 13.58 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.98 Total: 4.30 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.48 Total: -59.00 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.08 Total: -15.67 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.67 -5.06 -36.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902071644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.869 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds