Wall clock time and date at job start Sun Mar 29 2020 22:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.35964 * 126.07178 * 125.00007 * 3 2 1 5 5 C 1.35709 * 107.55297 * 180.02562 * 4 3 2 6 6 N 1.40796 * 126.06930 * 180.02562 * 5 4 3 7 7 C 1.46496 * 120.00265 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47180 * 179.97438 * 7 6 5 9 9 O 1.21289 * 119.99925 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00107 * 179.97438 * 8 7 6 11 11 C 1.37099 * 120.00025 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99917 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99631 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00027 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99562 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47332 * 89.99810 * 15 13 11 17 17 H 1.48502 * 109.46964 * 209.99791 * 15 13 11 18 18 H 1.48500 * 109.47166 * 329.99819 * 15 13 11 19 19 C 1.40221 * 107.86181 * 359.97438 * 5 4 3 20 20 N 1.30854 * 108.36804 * 359.72054 * 19 5 4 21 21 H 1.09000 * 109.47050 * 299.99945 * 1 2 3 22 22 H 1.09001 * 109.46801 * 60.00058 * 1 2 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 120.00226 * 2 1 3 25 25 H 1.09000 * 109.47050 * 240.00054 * 2 1 3 26 26 H 1.07996 * 126.22458 * 359.96075 * 4 3 2 27 27 H 0.97003 * 120.00025 * 359.97438 * 6 5 4 28 28 H 1.08993 * 109.47483 * 299.99902 * 7 6 5 29 29 H 1.09004 * 109.46606 * 60.00228 * 7 6 5 30 30 H 0.97000 * 119.99837 * 0.02562 * 10 8 7 31 31 H 0.97002 * 119.99322 * 179.97438 * 14 13 11 32 32 H 1.08006 * 125.81193 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8795 1.9259 0.9002 5 6 3.0749 3.2217 0.5475 6 7 3.8988 4.1475 1.2156 7 6 4.0131 5.5201 0.7164 8 6 4.9479 6.3011 1.6037 9 8 5.4678 5.7639 2.5588 10 7 5.2069 7.5962 1.3353 11 6 6.0577 8.3066 2.1422 12 1 6.5207 7.8283 2.9927 13 6 6.3243 9.6420 1.8658 14 7 5.7613 10.2238 0.8307 15 14 7.4841 10.6097 2.9648 16 1 8.8721 10.4840 2.4522 17 1 7.0851 12.0401 2.9677 18 1 7.4170 10.0743 4.3484 19 6 2.3115 3.4745 -0.6012 20 7 1.6859 2.3736 -0.9312 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 3.3259 1.4197 1.7433 27 1 4.3908 3.8766 2.0065 28 1 4.4045 5.5054 -0.3007 29 1 3.0301 5.9912 0.7207 30 1 4.7913 8.0257 0.5713 31 1 5.9472 11.1562 0.6381 32 1 2.2532 4.4164 -1.1267 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902071644.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:33 Heat of formation + Delta-G solvation = 19.936431 kcal Electronic energy + Delta-G solvation = -15944.110591 eV Core-core repulsion = 13133.524976 eV Total energy + Delta-G solvation = -2810.585615 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.90661 -40.18639 -36.59571 -35.85753 -34.54179 -33.32076 -31.18191 -29.95538 -27.67415 -25.82549 -24.65163 -21.98031 -21.45331 -20.68249 -19.90282 -18.42093 -17.58014 -16.86453 -16.40917 -16.06414 -16.02631 -15.81922 -15.24999 -15.03645 -14.63615 -14.03179 -13.89045 -13.51221 -13.29919 -13.17714 -12.90909 -12.87208 -12.43253 -12.28856 -12.11757 -11.55415 -11.54171 -10.95619 -10.46728 -10.20345 -10.05382 -8.48436 -7.93643 -5.97807 1.00689 1.38047 1.43135 1.55594 1.68731 1.97384 2.08788 2.28001 2.69439 3.19294 3.29916 3.78907 4.08454 4.17585 4.26168 4.32980 4.45715 4.54053 4.63638 4.66063 4.81202 4.88250 5.01390 5.27855 5.40133 5.51276 5.93840 6.24289 6.46393 6.58567 6.78912 7.08382 7.09358 7.51137 8.03117 8.68667 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.081766 B = 0.003814 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.360267 B = 7340.037994 C = 7600.751706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 N -0.372 5.372 4 C -0.031 4.031 5 C 0.049 3.951 6 N -0.735 5.735 7 C 0.143 3.857 8 C 0.433 3.567 9 O -0.630 6.630 10 N -0.563 5.563 11 C -0.337 4.337 12 H 0.081 0.919 13 C -0.010 4.010 14 N -0.917 5.917 15 Si 0.994 3.006 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.272 1.272 19 C -0.005 4.005 20 N -0.300 5.300 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.100 0.900 24 H 0.121 0.879 25 H 0.090 0.910 26 H 0.193 0.807 27 H 0.401 0.599 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.399 0.601 31 H 0.279 0.721 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.441 -15.722 -3.117 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 N -0.161 5.161 4 C -0.180 4.180 5 C -0.059 4.059 6 N -0.376 5.376 7 C 0.014 3.986 8 C 0.220 3.780 9 O -0.518 6.518 10 N -0.200 5.200 11 C -0.467 4.467 12 H 0.099 0.901 13 C -0.211 4.211 14 N -0.557 5.557 15 Si 0.818 3.182 16 H -0.196 1.196 17 H -0.195 1.195 18 H -0.197 1.197 19 C -0.192 4.192 20 N -0.124 5.124 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.118 0.882 24 H 0.139 0.861 25 H 0.108 0.892 26 H 0.210 0.790 27 H 0.238 0.762 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -8.967 -16.400 -3.509 19.018 hybrid contribution 1.142 1.321 0.915 1.972 sum -7.824 -15.080 -2.593 17.185 Atomic orbital electron populations 1.22030 0.93752 1.03882 1.02072 1.21949 0.96031 0.75847 1.05265 1.48621 1.36353 1.10610 1.20512 1.22065 1.01835 0.93769 1.00282 1.17963 1.00158 0.90604 0.97158 1.43475 1.53046 1.07687 1.33382 1.20590 0.98376 0.83177 0.96470 1.20741 0.86305 0.83061 0.87871 1.90459 1.57227 1.70302 1.33768 1.41853 1.41353 1.09162 1.27591 1.19698 1.23416 0.93738 1.09813 0.90053 1.26069 0.99396 0.97272 0.98337 1.69672 1.44051 1.13935 1.28043 0.84909 0.77964 0.77263 0.78098 1.19605 1.19535 1.19667 1.23803 0.99096 0.98727 0.97557 1.77046 1.23712 0.97117 1.14561 0.93143 0.93063 0.88171 0.86128 0.89220 0.79029 0.76230 0.89605 0.89632 0.76634 0.91138 0.79195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 10.10 71.98 0.73 -1.42 16 2 C 0.13 1.85 7.24 86.38 0.63 2.48 16 3 N -0.37 -8.85 3.71 -346.90 -1.29 -10.13 16 4 C -0.03 -0.79 11.52 83.47 0.96 0.17 16 5 C 0.05 1.46 6.96 37.60 0.26 1.72 16 6 N -0.74 -24.90 5.77 -343.66 -1.98 -26.89 16 7 C 0.14 5.01 6.11 85.63 0.52 5.54 16 8 C 0.43 20.33 7.85 87.66 0.69 21.02 16 9 O -0.63 -34.00 15.24 -3.06 -0.05 -34.04 16 10 N -0.56 -28.50 5.29 -306.98 -1.62 -30.12 16 11 C -0.34 -18.89 9.68 84.04 0.81 -18.08 16 12 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 13 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 14 N -0.92 -48.83 13.05 21.66 0.28 -48.54 16 15 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 C 0.00 -0.13 11.34 85.32 0.97 0.83 16 20 N -0.30 -8.60 12.42 -56.78 -0.70 -9.30 16 21 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.12 1.05 8.07 -2.39 -0.02 1.03 16 25 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 27 H 0.40 14.60 7.57 -92.71 -0.70 13.90 16 28 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 30 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 31 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.19 4.71 7.90 -2.91 -0.02 4.69 16 Total: -1.00 -68.06 286.47 2.41 -65.64 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -0.29 Total: 36.89 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 6.04 Total: 12.18 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -5.31 Total: -124.98 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.05 Total: -34.04 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -68.06 2.41 -65.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902071644.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.577 kcal (2) G-P(sol) polarization free energy of solvation -68.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds