Wall clock time and date at job start Sun Mar 29 2020 22:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47115 * 120.00376 * 2 1 4 4 C 1.32871 * 119.99976 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.99658 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47242 * 125.00120 * 5 4 3 7 7 S 1.81396 * 109.47078 * 179.97438 * 6 5 4 8 8 C 1.81401 * 102.99850 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47069 * 175.10018 * 8 7 6 10 10 C 1.50705 * 115.54513 * 65.25498 * 9 8 7 11 11 H 1.08002 * 119.99996 * 268.61636 * 10 9 8 12 12 C 1.37880 * 120.00144 * 88.61472 * 10 9 8 13 13 N 1.31509 * 119.99957 * 174.72171 * 12 10 9 14 14 Si 1.86797 * 119.99862 * 354.71886 * 12 10 9 15 15 H 1.48505 * 109.47197 * 92.48096 * 14 12 10 16 16 H 1.48494 * 109.47325 * 212.47747 * 14 12 10 17 17 H 1.48499 * 109.47263 * 332.48103 * 14 12 10 18 18 C 1.52998 * 117.50249 * 279.58387 * 9 8 7 19 19 C 1.52990 * 117.50204 * 210.92075 * 9 8 7 20 20 H 1.08002 * 119.99790 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.00040 * 180.02562 * 1 2 3 22 22 H 1.08008 * 119.99752 * 179.97438 * 2 1 3 23 23 H 1.08000 * 119.99628 * 359.97438 * 3 2 1 24 24 H 1.07994 * 120.00082 * 359.97438 * 4 3 2 25 25 H 1.08998 * 109.47079 * 4.99176 * 5 4 3 26 26 H 1.09008 * 109.46580 * 244.99788 * 5 4 3 27 27 H 1.08996 * 109.47006 * 299.99779 * 6 5 4 28 28 H 1.09001 * 109.46998 * 59.99812 * 6 5 4 29 29 H 1.08998 * 109.47385 * 295.10419 * 8 7 6 30 30 H 1.08998 * 109.47151 * 55.10603 * 8 7 6 31 31 H 0.97003 * 119.99973 * 179.97438 * 13 12 10 32 32 H 1.08995 * 117.49517 * 0.02562 * 18 9 8 33 33 H 1.08998 * 117.49644 * 145.01885 * 18 9 8 34 34 H 1.09001 * 117.50083 * 214.98440 * 19 9 8 35 35 H 1.09009 * 117.49986 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 3.3931 1.2739 -0.0005 5 6 4.1466 2.5790 0.0001 6 6 5.1186 2.6062 1.1813 7 16 6.0261 4.1769 1.1815 8 6 7.1081 4.0227 2.6293 9 6 8.0397 5.2343 2.7011 10 6 7.3649 6.5594 2.9456 11 1 7.0528 7.1687 2.1102 12 6 7.1459 6.9940 4.2356 13 7 6.6525 8.1939 4.4505 14 14 7.5502 5.8783 5.6782 15 1 8.9344 6.1507 6.1421 16 1 6.5968 6.1374 6.7868 17 1 7.4409 4.4597 5.2528 18 6 9.2783 5.2273 1.8029 19 6 9.4262 5.0241 3.3128 20 1 -0.5400 0.9353 0.0004 21 1 -0.5400 -0.9353 0.0004 22 1 1.8687 -0.9354 0.0004 23 1 1.5244 2.2093 -0.0004 24 1 3.9330 0.3386 -0.0005 25 1 3.4417 3.4055 0.0903 26 1 4.7041 2.6771 -0.9315 27 1 4.5612 2.5082 2.1128 28 1 5.8235 1.7797 1.0909 29 1 6.5010 3.9771 3.5335 30 1 7.7017 3.1126 2.5440 31 1 6.4981 8.4995 5.3580 32 1 9.4292 4.3597 1.1606 33 1 9.6053 6.1812 1.3891 34 1 9.8505 5.8444 3.8918 35 1 9.6746 4.0227 3.6647 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902452656.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:50 Heat of formation + Delta-G solvation = 44.461325 kcal Electronic energy + Delta-G solvation = -13921.889647 eV Core-core repulsion = 11626.367975 eV Total energy + Delta-G solvation = -2295.521672 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.109 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -36.95444 -36.41439 -33.47803 -32.06032 -29.39118 -28.02462 -25.40820 -23.75848 -21.61971 -20.55523 -19.79692 -19.00844 -16.45263 -15.71858 -15.44827 -14.95857 -14.61342 -14.30955 -13.80704 -13.29794 -13.00647 -12.72324 -12.56238 -12.46770 -12.08464 -11.70172 -11.24229 -11.16372 -10.96333 -10.90693 -10.67854 -10.41991 -10.12250 -9.66126 -9.34528 -9.02977 -8.57138 -8.46145 -8.35373 -6.90601 -6.08100 -4.09897 1.20497 2.26360 2.96659 3.28183 3.33226 3.37751 3.43343 4.42911 4.62657 4.86315 4.98224 5.01355 5.17789 5.20229 5.27450 5.39415 5.56394 5.64892 5.68953 5.87192 5.94591 6.07223 6.10287 6.15053 6.18728 6.36988 6.39232 6.47693 6.56005 6.73058 6.76545 7.05005 7.13258 7.74009 8.52817 8.97845 9.54919 11.04032 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.031204 B = 0.004775 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.097873 B = 5861.997635 C = 6221.370029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.124 4.124 3 C -0.145 4.145 4 C -0.127 4.127 5 C -0.075 4.075 6 C -0.100 4.100 7 S -0.229 6.229 8 C -0.042 4.042 9 C 0.014 3.986 10 C -0.479 4.479 11 H 0.081 0.919 12 C 0.079 3.921 13 N -0.896 5.896 14 Si 0.877 3.123 15 H -0.278 1.278 16 H -0.293 1.293 17 H -0.261 1.261 18 C -0.172 4.172 19 C -0.195 4.195 20 H 0.098 0.902 21 H 0.099 0.901 22 H 0.110 0.890 23 H 0.115 0.885 24 H 0.111 0.889 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.264 0.736 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 -15.068 -6.639 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.142 4.142 3 C -0.163 4.163 4 C -0.147 4.147 5 C -0.113 4.113 6 C -0.249 4.249 7 S 0.000 6.000 8 C -0.190 4.190 9 C 0.012 3.988 10 C -0.516 4.516 11 H 0.099 0.901 12 C -0.123 4.123 13 N -0.533 5.533 14 Si 0.705 3.295 15 H -0.204 1.204 16 H -0.220 1.220 17 H -0.186 1.186 18 C -0.210 4.210 19 C -0.235 4.235 20 H 0.117 0.883 21 H 0.117 0.883 22 H 0.128 0.872 23 H 0.133 0.867 24 H 0.129 0.871 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.696 -14.078 -7.202 16.808 hybrid contribution 0.331 -1.628 1.904 2.527 sum -5.365 -15.706 -5.298 17.422 Atomic orbital electron populations 1.24339 0.95657 1.01895 1.00564 1.22005 0.95471 0.96694 1.00045 1.21966 0.94715 0.96815 1.02810 1.23430 0.94897 0.98487 0.97855 1.20406 0.97605 0.95395 0.97859 1.23323 1.00418 0.99687 1.01444 1.87061 1.50443 1.22571 1.39958 1.23283 0.98842 1.00158 0.96725 1.19017 0.85371 0.94127 1.00314 1.20216 1.38166 0.99562 0.93685 0.90088 1.24947 0.94283 0.94515 0.98590 1.69896 1.44851 1.17333 1.21232 0.86896 0.78037 0.82310 0.82277 1.20438 1.22018 1.18570 1.22822 1.05138 1.01279 0.91745 1.23042 1.03394 1.00477 0.96553 0.88328 0.88306 0.87189 0.86707 0.87144 0.90343 0.89936 0.90685 0.91022 0.90611 0.92797 0.92610 0.90742 0.89352 0.89160 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 14.43 28.88 0.42 -1.14 16 2 C -0.12 -1.16 9.83 -37.83 -0.37 -1.53 16 3 C -0.14 -1.52 9.44 -37.83 -0.36 -1.88 16 4 C -0.13 -1.36 9.22 -36.16 -0.33 -1.69 16 5 C -0.07 -0.93 5.67 -27.88 -0.16 -1.08 16 6 C -0.10 -1.46 5.92 37.16 0.22 -1.24 16 7 S -0.23 -4.45 21.43 -107.50 -2.30 -6.75 16 8 C -0.04 -0.87 5.42 37.16 0.20 -0.67 16 9 C 0.01 0.32 0.79 -155.66 -0.12 0.19 16 10 C -0.48 -13.35 9.07 -34.44 -0.31 -13.66 16 11 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 12 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 13 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 14 Si 0.88 21.52 24.95 -169.99 -4.24 17.28 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 17 H -0.26 -6.03 5.69 56.52 0.32 -5.71 16 18 C -0.17 -3.55 9.96 -26.70 -0.27 -3.82 16 19 C -0.20 -4.13 7.67 -26.70 -0.20 -4.34 16 20 H 0.10 0.78 8.05 -52.49 -0.42 0.36 16 21 H 0.10 0.67 8.06 -52.48 -0.42 0.24 16 22 H 0.11 0.90 8.06 -52.48 -0.42 0.48 16 23 H 0.12 1.18 7.87 -52.49 -0.41 0.77 16 24 H 0.11 1.05 8.05 -52.49 -0.42 0.63 16 25 H 0.08 1.02 7.82 -51.93 -0.41 0.61 16 26 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 29 H 0.08 1.66 6.54 -51.92 -0.34 1.32 16 30 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.09 2.01 7.33 -51.93 -0.38 1.63 16 35 H 0.07 1.35 8.14 -51.92 -0.42 0.92 16 LS Contribution 308.23 15.07 4.64 4.64 Total: -1.00 -29.57 308.23 -8.34 -37.91 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.82 Total: 2.11 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: -1.39 Total: -28.69 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.24 Total: 17.28 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -2.30 Total: -6.75 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.57 -8.34 -37.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902452656.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.369 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds