Wall clock time and date at job start Sun Mar 29 2020 22:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47199 * 2 1 4 4 C 1.34813 * 126.59471 * 125.29409 * 3 2 1 5 5 C 1.36596 * 106.83883 * 180.13585 * 4 3 2 6 6 C 1.47522 * 125.76861 * 179.90089 * 5 4 3 7 7 O 1.21603 * 120.00315 * 359.70827 * 6 5 4 8 8 N 1.34784 * 120.00314 * 179.71406 * 6 5 4 9 9 C 1.46497 * 120.00075 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.47049 * 324.99133 * 9 8 6 11 11 C 1.52997 * 109.47188 * 85.00024 * 9 8 6 12 12 C 1.50706 * 109.46582 * 204.99875 * 9 8 6 13 13 H 1.07999 * 120.00196 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47347 * 59.99862 * 16 14 12 18 18 H 1.48503 * 109.46845 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47399 * 299.99813 * 16 14 12 20 20 N 1.34401 * 108.46089 * 359.63486 * 5 4 3 21 21 N 1.28763 * 109.52115 * 0.22643 * 20 5 4 22 22 H 1.09000 * 109.47455 * 299.99821 * 1 2 3 23 23 H 1.09000 * 109.47062 * 59.99817 * 1 2 3 24 24 H 1.08997 * 109.47598 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46866 * 240.00661 * 2 1 3 26 26 H 1.09000 * 109.47062 * 120.00183 * 2 1 3 27 27 H 1.08000 * 126.58166 * 359.97438 * 4 3 2 28 28 H 0.96996 * 119.99132 * 359.97438 * 8 6 5 29 29 H 1.09002 * 109.47153 * 299.99573 * 11 9 8 30 30 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 31 31 H 1.09004 * 109.47261 * 59.99745 * 11 9 8 32 32 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8758 1.9305 0.8834 5 6 3.0505 3.2323 0.5084 6 6 3.9083 4.2189 1.1918 7 8 4.5329 3.8974 2.1844 8 7 3.9997 5.4767 0.7161 9 6 4.8511 6.4565 1.3952 10 1 4.8236 6.2786 2.4702 11 6 6.2892 6.3183 0.8918 12 6 4.3481 7.8468 1.1032 13 1 3.4812 7.9865 0.4743 14 6 4.9946 8.9404 1.6389 15 7 6.0505 8.7704 2.4042 16 14 4.3707 10.6637 1.2775 17 1 2.9748 10.7973 1.7660 18 1 5.2338 11.6570 1.9657 19 1 4.4080 10.9067 -0.1870 20 7 2.3133 3.4607 -0.5919 21 7 1.6877 2.3847 -0.9218 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8900 27 1 3.3345 1.4368 1.7274 28 1 3.5016 5.7329 -0.0758 29 1 6.6530 5.3127 1.1030 30 1 6.9226 7.0477 1.3967 31 1 6.3166 6.4962 -0.1833 32 1 6.5056 9.5398 2.7807 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931157899.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:56 Heat of formation + Delta-G solvation = 51.398842 kcal Electronic energy + Delta-G solvation = -16411.669213 eV Core-core repulsion = 13602.447911 eV Total energy + Delta-G solvation = -2809.221302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.02130 -38.51835 -35.47137 -34.75453 -32.32170 -31.29882 -30.40212 -28.55273 -25.19899 -24.72809 -23.47462 -21.68790 -20.81879 -19.36640 -18.02446 -16.58253 -16.08821 -15.52063 -15.30195 -14.70521 -14.58285 -14.21852 -13.76818 -13.28455 -12.85742 -12.66272 -12.33341 -12.16679 -11.74204 -11.63747 -11.10402 -11.00450 -10.90386 -10.69567 -10.32233 -10.28319 -10.16679 -9.26575 -9.09698 -8.98293 -8.49057 -7.85071 -6.06354 -4.14852 1.26457 2.05817 2.07287 3.32048 3.36142 3.38637 3.95757 3.97141 4.23715 4.40711 4.46712 4.51098 4.73595 5.01949 5.16403 5.17572 5.25985 5.34490 5.50931 5.71684 6.09801 6.41314 6.88673 7.02894 7.20029 7.48216 7.61262 7.75707 7.95513 8.11877 8.19952 8.73486 8.82789 9.13712 9.52081 10.99803 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.048411 B = 0.004928 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.239954 B = 5680.045584 C = 6024.204474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 N -0.367 5.367 4 C 0.082 3.918 5 C -0.087 4.087 6 C 0.586 3.414 7 O -0.556 6.556 8 N -0.689 5.689 9 C 0.263 3.737 10 H 0.051 0.949 11 C -0.147 4.147 12 C -0.533 4.533 13 H 0.062 0.938 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.903 3.097 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 N -0.204 5.204 21 N -0.074 5.074 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.202 0.798 28 H 0.397 0.603 29 H 0.015 0.985 30 H 0.091 0.909 31 H 0.027 0.973 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.092 -16.673 -3.978 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.001 4.001 3 N -0.154 5.154 4 C -0.074 4.074 5 C -0.227 4.227 6 C 0.368 3.632 7 O -0.434 6.434 8 N -0.335 5.335 9 C 0.162 3.838 10 H 0.069 0.931 11 C -0.206 4.206 12 C -0.571 4.571 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.730 3.270 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.201 1.201 20 N -0.078 5.078 21 N -0.055 5.055 22 H 0.083 0.917 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.219 0.781 28 H 0.231 0.769 29 H 0.034 0.966 30 H 0.110 0.890 31 H 0.047 0.953 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.309 -16.438 -4.405 18.938 hybrid contribution -0.011 0.590 0.312 0.667 sum -8.319 -15.848 -4.093 18.361 Atomic orbital electron populations 1.22079 0.92961 1.03408 1.04080 1.21952 0.96701 0.76644 1.04827 1.50551 1.32048 1.12153 1.20625 1.23372 0.93524 0.94358 0.96158 1.21964 1.06877 0.95280 0.98543 1.16849 0.80672 0.82110 0.83553 1.90755 1.47171 1.79307 1.26202 1.46402 1.46725 1.09736 1.30655 1.18821 0.86310 0.85090 0.93569 0.93117 1.22085 0.99940 0.99143 0.99426 1.21207 1.13770 0.90107 1.32030 0.91939 1.24873 0.94751 0.99341 0.94683 1.69893 1.19264 1.30814 1.32310 0.86490 0.78745 0.83250 0.78515 1.20166 1.21181 1.20117 1.74655 1.04798 1.17841 1.10470 1.81902 1.20970 0.90501 1.12085 0.91691 0.90753 0.90120 0.88633 0.87881 0.78087 0.76918 0.96573 0.89024 0.95339 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.12 37.16 0.38 -0.62 16 2 C 0.12 0.77 7.26 -4.04 -0.03 0.74 16 3 N -0.37 -4.32 3.69 -61.06 -0.23 -4.55 16 4 C 0.08 1.10 11.27 -16.84 -0.19 0.91 16 5 C -0.09 -1.54 6.99 -83.55 -0.58 -2.12 16 6 C 0.59 12.65 7.78 -12.47 -0.10 12.55 16 7 O -0.56 -13.35 16.53 5.28 0.09 -13.26 16 8 N -0.69 -15.73 5.07 -55.98 -0.28 -16.01 16 9 C 0.26 6.96 2.56 -69.08 -0.18 6.78 16 10 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 11 C -0.15 -3.77 9.26 37.16 0.34 -3.43 16 12 C -0.53 -14.62 8.73 -34.44 -0.30 -14.92 16 13 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 14 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 15 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 16 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 N -0.20 -3.62 12.04 32.85 0.40 -3.22 16 21 N -0.07 -1.14 13.65 60.35 0.82 -0.32 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.20 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.40 8.47 8.23 -40.82 -0.34 8.14 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 285.33 15.07 4.30 4.30 Total: -1.00 -32.76 285.33 -4.01 -36.77 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -3.96 Total: 3.19 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.75 Total: 1.62 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 1.34 Total: -48.74 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.76 -4.01 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157899.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.172 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds