Wall clock time and date at job start Sun Mar 29 2020 22:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 119.99804 * 2 1 4 4 H 1.48500 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47433 * 300.00030 * 3 2 1 6 6 H 1.48508 * 109.47129 * 60.00274 * 3 2 1 7 7 C 1.38809 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00539 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99704 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00104 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47310 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47053 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99769 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00044 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99953 * 180.02562 * 13 12 11 16 16 N 1.46494 * 109.47023 * 179.97438 * 15 13 12 17 17 C 1.34954 * 126.03475 * 124.99747 * 16 15 13 18 18 C 1.35316 * 107.74368 * 179.73518 * 17 16 15 19 19 C 1.39868 * 107.92272 * 0.02562 * 18 17 16 20 20 N 1.30837 * 108.20148 * 359.97438 * 19 18 17 21 21 H 0.97003 * 120.00195 * 0.02562 * 1 2 3 22 22 H 0.97002 * 120.00198 * 0.02562 * 9 7 2 23 23 H 1.09007 * 109.46615 * 60.00389 * 10 9 7 24 24 H 1.08998 * 109.47586 * 300.00717 * 10 9 7 25 25 H 1.08993 * 109.46791 * 60.00515 * 11 10 9 26 26 H 1.08999 * 109.47034 * 300.00081 * 11 10 9 27 27 H 0.96996 * 120.00074 * 359.97438 * 12 11 10 28 28 H 1.08999 * 109.46800 * 59.99220 * 15 13 12 29 29 H 1.09007 * 109.46625 * 299.99540 * 15 13 12 30 30 H 1.07999 * 126.12395 * 359.71501 * 17 16 15 31 31 H 1.07999 * 126.03437 * 179.97438 * 18 17 16 32 32 H 1.08001 * 125.89990 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0639 -4.8197 -0.0021 12 7 1.7965 -6.0884 -0.0026 13 6 1.1226 -7.2556 -0.0035 14 8 -0.0902 -7.2556 -0.0035 15 6 1.8762 -8.5607 -0.0035 16 7 0.9242 -9.6742 -0.0040 17 6 0.8843 -10.6842 -0.8981 18 6 -0.1321 -11.5057 -0.5473 19 6 -0.7344 -10.9795 0.6001 20 7 -0.1019 -9.8817 0.9268 21 1 -0.4850 0.8401 -0.0004 22 1 0.3556 -2.3881 -0.0005 23 1 2.6854 -3.7148 0.8879 24 1 2.6842 -3.7141 -0.8921 25 1 0.4370 -4.7614 -0.8918 26 1 0.4376 -4.7626 0.8882 27 1 2.7664 -6.0884 -0.0030 28 1 2.5022 -8.6187 0.8869 29 1 2.5034 -8.6181 -0.8931 30 1 1.5451 -10.8135 -1.7426 31 1 -0.4267 -12.4078 -1.0628 32 1 -1.5761 -11.4057 1.1257 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123515659.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:20 Heat of formation + Delta-G solvation = 32.442937 kcal Electronic energy + Delta-G solvation = -15827.722167 eV Core-core repulsion = 13017.678875 eV Total energy + Delta-G solvation = -2810.043292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.07093 -40.56870 -37.35623 -35.53842 -34.30746 -33.13708 -30.98579 -29.97015 -27.97268 -25.51169 -23.22870 -22.48184 -21.92493 -21.21856 -19.36646 -18.35162 -18.20101 -16.94296 -16.82525 -16.40033 -15.93209 -15.48623 -15.13003 -15.11048 -14.80753 -14.43117 -14.21371 -13.63816 -13.30050 -13.06105 -12.99340 -12.69335 -12.52839 -12.05662 -11.87465 -11.53240 -11.22619 -11.02074 -10.31944 -10.20141 -9.48045 -9.08597 -7.98439 -5.30254 0.98676 1.47750 1.49454 1.50165 1.54460 1.59650 2.02733 2.12182 2.56632 3.36271 3.56741 3.78634 3.99518 4.09052 4.15343 4.16726 4.19796 4.28163 4.55731 4.74579 4.94256 4.99268 5.11371 5.18798 5.32023 5.47762 5.75604 6.13674 6.22336 6.49766 6.83044 7.17785 7.28293 8.00191 8.22501 9.25597 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.085098 B = 0.003431 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 328.951563 B = 8159.277852 C = 8359.220814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.247 4.247 8 H 0.086 0.914 9 N -0.750 5.750 10 C 0.150 3.850 11 C 0.130 3.870 12 N -0.705 5.705 13 C 0.491 3.509 14 O -0.573 6.573 15 C 0.120 3.880 16 N -0.376 5.376 17 C 0.056 3.944 18 C -0.286 4.286 19 C 0.024 3.976 20 N -0.330 5.330 21 H 0.252 0.748 22 H 0.372 0.628 23 H 0.039 0.961 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.422 0.578 28 H 0.141 0.859 29 H 0.178 0.822 30 H 0.218 0.782 31 H 0.171 0.829 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.765 -23.336 -2.705 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.378 4.378 8 H 0.104 0.896 9 N -0.393 5.393 10 C 0.023 3.977 11 C 0.005 3.995 12 N -0.359 5.359 13 C 0.277 3.723 14 O -0.451 6.451 15 C -0.005 4.005 16 N -0.159 5.159 17 C -0.088 4.088 18 C -0.315 4.315 19 C -0.162 4.162 20 N -0.151 5.151 21 H 0.061 0.939 22 H 0.204 0.796 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.260 0.740 28 H 0.158 0.842 29 H 0.195 0.805 30 H 0.234 0.766 31 H 0.188 0.812 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 8.261 -22.153 -1.882 23.717 hybrid contribution -0.256 0.586 -0.414 0.762 sum 8.005 -21.567 -2.296 23.119 Atomic orbital electron populations 1.69848 1.06943 1.26243 1.59252 1.25699 0.96429 1.01593 1.03376 0.84980 0.78395 0.79207 0.76567 1.18380 1.22063 1.22169 1.19707 0.91801 0.84772 1.41540 0.89647 1.42474 1.05764 1.01267 1.89802 1.20862 0.93475 0.83821 0.99533 1.21101 0.94854 0.82873 1.00703 1.45595 1.11352 1.04188 1.74793 1.21402 0.88272 0.86670 0.75973 1.90791 1.16362 1.87869 1.50057 1.21810 0.88950 0.79764 1.09947 1.48350 1.25676 1.20062 1.21854 1.23315 1.00853 0.88578 0.96092 1.21895 1.01668 1.06107 1.01811 1.24406 1.00624 0.93058 0.98125 1.77440 1.02573 1.19413 1.15679 0.93920 0.79617 0.94267 0.93949 0.93132 0.93572 0.73958 0.84172 0.80500 0.76551 0.81168 0.78681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.39 13.06 21.65 0.28 -60.11 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 3 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.25 -13.57 9.99 84.03 0.84 -12.73 16 8 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.75 -38.09 5.60 -343.44 -1.92 -40.01 16 10 C 0.15 5.54 6.37 86.38 0.55 6.09 16 11 C 0.13 4.40 5.79 86.38 0.50 4.90 16 12 N -0.70 -16.58 5.56 -463.06 -2.57 -19.15 16 13 C 0.49 12.91 7.86 87.66 0.69 13.60 16 14 O -0.57 -22.47 15.72 -3.04 -0.05 -22.52 16 15 C 0.12 1.77 6.99 85.64 0.60 2.37 16 16 N -0.38 -8.26 3.39 -351.79 -1.19 -9.45 16 17 C 0.06 0.89 11.45 83.54 0.96 1.85 16 18 C -0.29 -5.09 10.80 21.99 0.24 -4.85 16 19 C 0.02 0.56 12.03 85.24 1.02 1.59 16 20 N -0.33 -9.77 11.66 -57.02 -0.66 -10.43 16 21 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 22 H 0.37 20.68 7.67 -92.71 -0.71 19.97 16 23 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.42 6.10 8.47 -92.71 -0.79 5.32 16 28 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.18 0.70 8.07 -2.38 -0.02 0.69 16 30 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -84.05 287.88 1.41 -82.64 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -0.36 Total: 22.64 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.86 Total: 8.76 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -6.07 Total: -139.15 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -84.05 1.41 -82.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123515659.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.082 kcal (2) G-P(sol) polarization free energy of solvation -84.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds