Wall clock time and date at job start Sun Mar 29 2020 22:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47052 * 2 1 4 4 O 1.42902 * 109.46960 * 240.00469 * 2 1 3 5 5 C 1.42898 * 114.00186 * 89.99675 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47466 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00362 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99850 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47052 * 89.99717 * 11 9 7 13 13 H 1.48495 * 109.47307 * 209.99656 * 11 9 7 14 14 H 1.48500 * 109.47143 * 330.00164 * 11 9 7 15 15 C 1.50698 * 109.47335 * 120.00417 * 2 1 3 16 16 C 1.38263 * 119.98781 * 264.99981 * 15 2 1 17 17 C 1.38219 * 120.05328 * 179.97438 * 16 15 2 18 18 C 1.38221 * 120.02519 * 0.02562 * 17 16 15 19 19 C 1.38440 * 119.97398 * 359.97438 * 18 17 16 20 20 F 1.35104 * 120.02624 * 180.02562 * 19 18 17 21 21 C 1.38179 * 119.98788 * 84.72406 * 15 2 1 22 22 H 1.09005 * 109.47615 * 59.99772 * 1 2 3 23 23 H 1.09006 * 109.47596 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47046 * 299.99764 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 26 26 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 27 27 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 28 28 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 29 29 H 0.96994 * 119.99814 * 180.02562 * 10 9 7 30 30 H 1.08004 * 119.97033 * 0.02562 * 16 15 2 31 31 H 1.08003 * 119.98907 * 180.02562 * 17 16 15 32 32 H 1.08001 * 120.01302 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.01194 * 359.97438 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1999 0.1830 -2.2941 6 6 2.7077 -0.6406 -3.4793 7 6 2.9125 0.2628 -4.6679 8 1 2.7021 1.3190 -4.5861 9 6 3.3697 -0.2586 -5.8596 10 7 3.5489 0.5299 -6.8968 11 14 3.7358 -2.0850 -6.0006 12 1 2.5128 -2.8024 -6.4421 13 1 4.8197 -2.2974 -6.9931 14 1 4.1658 -2.6071 -4.6786 15 6 2.0323 -0.7105 1.2304 16 6 2.3611 0.0142 2.3610 17 6 2.8215 -0.6361 3.4904 18 6 2.9543 -2.0119 3.4906 19 6 2.6254 -2.7386 2.3591 20 9 2.7542 -4.0835 2.3582 21 6 2.1588 -2.0865 1.2301 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.2536 0.6548 -2.5588 26 1 2.9319 0.9514 -2.0451 27 1 3.6539 -1.1127 -3.2149 28 1 1.9756 -1.4087 -3.7283 29 1 3.8702 0.1629 -7.7352 30 1 2.2573 1.0893 2.3619 31 1 3.0777 -0.0690 4.3732 32 1 3.3137 -2.5199 4.3733 33 1 1.8973 -2.6528 0.3484 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631275.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:46 Heat of formation + Delta-G solvation = -99.699151 kcal Electronic energy + Delta-G solvation = -16180.780236 eV Core-core repulsion = 13312.794120 eV Total energy + Delta-G solvation = -2867.986115 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.90703 -40.50072 -38.72904 -35.46846 -33.89380 -32.04032 -31.55177 -30.11310 -26.81464 -24.87234 -23.62558 -22.52913 -21.97022 -19.14836 -18.43885 -17.74397 -17.08944 -16.65820 -16.62481 -16.48918 -16.29054 -15.78799 -14.80070 -14.74023 -14.55471 -14.13875 -13.98929 -13.46020 -13.29353 -13.00220 -12.95146 -12.74497 -12.39856 -12.08270 -11.98540 -11.72789 -11.71899 -11.40187 -10.83117 -10.50657 -9.92194 -9.64962 -8.34578 -6.39818 0.15511 0.25865 1.34022 1.35754 1.48710 2.32864 2.55528 2.80359 3.00775 3.24059 3.68633 3.90099 4.09984 4.16662 4.24136 4.30176 4.41912 4.43649 4.48191 4.71937 4.78481 4.84062 4.98289 5.09092 5.15004 5.19735 5.23794 5.35032 5.40509 5.48661 5.57536 5.93975 6.18257 6.38529 6.66413 7.25552 8.81413 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.030435 B = 0.005183 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.766049 B = 5401.123052 C = 5963.079803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 H 0.085 0.915 4 O -0.401 6.401 5 C 0.089 3.911 6 C -0.008 4.008 7 C -0.534 4.534 8 H 0.042 0.958 9 C 0.014 3.986 10 N -0.944 5.944 11 Si 0.946 3.054 12 H -0.265 1.265 13 H -0.279 1.279 14 H -0.255 1.255 15 C -0.065 4.065 16 C -0.120 4.120 17 C -0.083 4.083 18 C -0.154 4.154 19 C 0.071 3.929 20 F -0.153 7.153 21 C -0.149 4.149 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.269 0.731 30 H 0.157 0.843 31 H 0.172 0.828 32 H 0.157 0.843 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.719 -2.457 23.194 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.057 3.943 3 H 0.103 0.897 4 O -0.322 6.322 5 C 0.013 3.987 6 C -0.045 4.045 7 C -0.572 4.572 8 H 0.060 0.940 9 C -0.184 4.184 10 N -0.584 5.584 11 Si 0.770 3.230 12 H -0.190 1.190 13 H -0.204 1.204 14 H -0.179 1.179 15 C -0.065 4.065 16 C -0.138 4.138 17 C -0.101 4.101 18 C -0.172 4.172 19 C 0.052 3.948 20 F -0.132 7.132 21 C -0.168 4.168 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.174 0.826 31 H 0.189 0.811 32 H 0.174 0.826 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.629 -2.699 23.005 23.446 hybrid contribution 0.166 -0.749 -0.925 1.202 sum -3.463 -3.448 22.080 22.615 Atomic orbital electron populations 1.22230 0.93721 1.02796 1.03349 1.21091 0.94765 0.95607 0.82870 0.89709 1.87895 1.86824 1.36790 1.20649 1.22327 0.98876 0.92471 0.84975 1.19420 0.96517 0.96145 0.92445 1.21212 1.44806 0.95449 0.95745 0.93950 1.25852 0.94465 1.02972 0.95101 1.70026 1.47582 1.37768 1.03011 0.85718 0.78740 0.79801 0.78789 1.18989 1.20403 1.17916 1.19765 0.98578 0.92675 0.95482 1.21397 0.98797 1.01623 0.91977 1.21384 0.96553 0.92959 0.99170 1.21481 1.02650 0.95643 0.97476 1.18000 1.03415 0.76891 0.96450 1.91460 1.93991 1.30563 1.97162 1.21005 1.02429 0.95753 0.97564 0.92098 0.92640 0.89080 0.93373 0.93626 0.96292 0.96161 0.92179 0.82553 0.81067 0.82563 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 9.51 71.98 0.68 -3.12 16 2 C 0.11 3.09 2.93 29.85 0.09 3.18 16 3 H 0.09 2.04 7.70 -2.39 -0.02 2.02 16 4 O -0.40 -14.77 9.14 -148.98 -1.36 -16.13 16 5 C 0.09 3.66 5.69 71.98 0.41 4.06 16 6 C -0.01 -0.38 4.41 29.85 0.13 -0.25 16 7 C -0.53 -31.15 9.66 25.60 0.25 -30.91 16 8 H 0.04 2.65 7.99 -2.91 -0.02 2.63 16 9 C 0.01 0.83 5.47 84.65 0.46 1.29 16 10 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 11 Si 0.95 45.43 27.47 68.60 1.88 47.32 16 12 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 H -0.26 -11.83 6.54 99.48 0.65 -11.18 16 15 C -0.06 -1.61 5.00 -19.87 -0.10 -1.71 16 16 C -0.12 -2.14 9.68 22.27 0.22 -1.93 16 17 C -0.08 -1.23 10.04 22.26 0.22 -1.00 16 18 C -0.15 -2.83 10.03 22.31 0.22 -2.61 16 19 C 0.07 1.82 7.30 22.37 0.16 1.98 16 20 F -0.15 -4.25 17.27 44.97 0.78 -3.47 16 21 C -0.15 -4.20 9.33 22.31 0.21 -3.99 16 22 H 0.06 1.47 7.87 -2.38 -0.02 1.45 16 23 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 1.89 7.87 -2.39 -0.02 1.87 16 26 H 0.05 1.81 8.09 -2.39 -0.02 1.79 16 27 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 28 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 29 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 30 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 33 H 0.12 3.79 7.64 -2.91 -0.02 3.77 16 Total: -1.00 -68.20 288.33 5.59 -62.62 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.03 Total: 3.42 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 2.96 Total: -35.00 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.30 Total: -58.75 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -1.36 Total: -16.13 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.32 kcal Total: -68.20 5.59 -62.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631275.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.084 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds