Wall clock time and date at job start Sun Mar 29 2020 22:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46614 * 2 1 4 4 O 1.42899 * 109.47438 * 120.00276 * 2 1 3 5 5 C 1.42903 * 113.99629 * 270.00038 * 4 2 1 6 6 C 1.53000 * 109.46726 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99928 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99611 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99711 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00219 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46794 * 90.00022 * 11 9 7 13 13 H 1.48502 * 109.47140 * 210.00005 * 11 9 7 14 14 H 1.48501 * 109.46982 * 330.00118 * 11 9 7 15 15 C 1.50704 * 109.46819 * 240.00548 * 2 1 3 16 16 C 1.38250 * 119.97127 * 279.72142 * 15 2 1 17 17 C 1.38190 * 120.02708 * 179.72898 * 16 15 2 18 18 C 1.38471 * 119.97138 * 0.52314 * 17 16 15 19 19 F 1.35090 * 120.02489 * 179.72610 * 18 17 16 20 20 C 1.38453 * 119.94591 * 359.75076 * 18 17 16 21 21 C 1.38193 * 119.97832 * 359.97438 * 20 18 17 22 22 H 1.08994 * 109.47301 * 59.99785 * 1 2 3 23 23 H 1.08999 * 109.46614 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46387 * 299.99499 * 1 2 3 25 25 H 1.09002 * 109.47382 * 59.99956 * 5 4 2 26 26 H 1.09001 * 109.46938 * 299.99942 * 5 4 2 27 27 H 1.09001 * 109.47194 * 299.99575 * 6 5 4 28 28 H 1.08992 * 109.47399 * 59.99748 * 6 5 4 29 29 H 0.97000 * 119.99684 * 179.97438 * 10 9 7 30 30 H 1.07999 * 119.98487 * 359.97438 * 16 15 2 31 31 H 1.08000 * 120.01526 * 180.25424 * 17 16 15 32 32 H 1.08001 * 120.01234 * 179.97438 * 20 18 17 33 33 H 1.08009 * 119.99158 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6737 1.1667 5 6 2.2002 0.1829 2.2940 6 6 2.7093 -0.6406 3.4787 7 6 2.9130 0.2626 4.6677 8 1 2.7010 1.3185 4.5864 9 6 3.3701 -0.2590 5.8594 10 7 3.5483 0.5293 6.8969 11 14 3.7361 -2.0854 6.0003 12 1 5.1531 -2.3360 5.6335 13 1 3.5000 -2.5313 7.3969 14 1 2.8461 -2.8408 5.0823 15 6 2.0324 -0.7103 -1.2306 16 6 2.0719 -2.0919 -1.2628 17 6 2.5270 -2.7445 -2.3927 18 6 2.9537 -2.0139 -3.4888 19 9 3.4039 -2.6507 -4.5919 20 6 2.9189 -0.6303 -3.4533 21 6 2.4581 0.0201 -2.3244 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.2539 0.6547 2.5588 26 1 2.9321 0.9513 2.0449 27 1 1.9778 -1.4093 3.7280 28 1 3.6556 -1.1120 3.2136 29 1 3.8695 0.1622 7.7353 30 1 1.7432 -2.6614 -0.4060 31 1 2.5539 -3.8239 -2.4192 32 1 3.2519 -0.0594 -4.3075 33 1 2.4313 1.0994 -2.2962 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205632146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:53 Heat of formation + Delta-G solvation = -99.230714 kcal Electronic energy + Delta-G solvation = -16077.735756 eV Core-core repulsion = 13209.769954 eV Total energy + Delta-G solvation = -2867.965802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.90456 -40.50355 -38.68969 -35.43035 -33.74847 -32.15125 -31.87253 -29.79694 -26.77369 -24.60117 -23.96991 -22.51639 -21.87649 -19.12132 -18.66380 -17.72323 -17.25391 -16.61634 -16.48022 -16.44168 -16.20449 -15.39774 -14.81430 -14.67334 -14.44228 -14.27101 -14.01901 -13.74049 -13.30511 -13.15842 -12.93323 -12.72919 -12.15170 -12.08413 -11.88424 -11.76292 -11.68262 -11.37024 -10.81321 -10.46266 -10.05912 -9.57099 -8.32689 -6.38120 0.10708 0.28530 1.36600 1.37834 1.50835 2.34925 2.52825 2.84486 3.02870 3.27635 3.74688 3.80963 3.97415 4.15778 4.25051 4.38289 4.44662 4.46240 4.48901 4.74212 4.85903 4.86683 4.98640 5.05613 5.14766 5.18004 5.25560 5.30389 5.43713 5.52211 5.59763 5.91122 6.20103 6.41070 6.68451 7.27249 8.83374 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.035438 B = 0.004688 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.923772 B = 5971.630878 C = 6393.447997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 H 0.079 0.921 4 O -0.398 6.398 5 C 0.089 3.911 6 C -0.007 4.007 7 C -0.535 4.535 8 H 0.040 0.960 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.948 3.052 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.250 1.250 15 C -0.101 4.101 16 C -0.076 4.076 17 C -0.159 4.159 18 C 0.079 3.921 19 F -0.148 7.148 20 C -0.152 4.152 21 C -0.081 4.081 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.023 0.977 28 H 0.020 0.980 29 H 0.269 0.731 30 H 0.132 0.868 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 -3.795 -21.432 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.059 3.941 3 H 0.097 0.903 4 O -0.318 6.318 5 C 0.013 3.987 6 C -0.045 4.045 7 C -0.573 4.573 8 H 0.058 0.942 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.771 3.229 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.174 1.174 15 C -0.101 4.101 16 C -0.094 4.094 17 C -0.178 4.178 18 C 0.060 3.940 19 F -0.126 7.126 20 C -0.170 4.170 21 C -0.099 4.099 22 H 0.105 0.895 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.149 0.851 31 H 0.165 0.835 32 H 0.176 0.824 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.100 -4.006 -21.293 22.051 hybrid contribution 0.321 -0.399 0.476 0.699 sum -3.780 -4.406 -20.817 21.611 Atomic orbital electron populations 1.22233 0.93866 1.03006 1.03042 1.21026 0.94641 0.95451 0.82951 0.90337 1.87881 1.86806 1.36613 1.20478 1.22316 0.98760 0.92502 0.85075 1.19417 0.96601 0.96181 0.92267 1.21234 1.44772 0.95424 0.95862 0.94158 1.25889 0.94474 1.03131 0.95078 1.70035 1.47605 1.37855 1.03063 0.85686 0.79644 0.79733 0.77791 1.19176 1.20554 1.17413 1.19995 1.00486 0.94299 0.95318 1.20965 0.96999 0.94324 0.97138 1.21316 1.02139 1.01615 0.92729 1.17955 1.00643 0.91495 0.83919 1.91471 1.87024 1.82496 1.51634 1.21337 1.02755 0.92171 1.00782 1.21113 0.96105 1.01420 0.91281 0.89514 0.92134 0.92313 0.93533 0.93843 0.95842 0.96203 0.92230 0.85052 0.83531 0.82391 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 9.51 71.98 0.68 -2.97 16 2 C 0.12 3.04 2.93 29.85 0.09 3.13 16 3 H 0.08 1.87 7.65 -2.39 -0.02 1.85 16 4 O -0.40 -13.91 9.30 -148.98 -1.39 -15.30 16 5 C 0.09 3.56 5.69 71.98 0.41 3.97 16 6 C -0.01 -0.35 4.41 29.85 0.13 -0.21 16 7 C -0.53 -30.84 9.66 25.60 0.25 -30.59 16 8 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 9 C 0.01 0.70 5.47 84.66 0.46 1.16 16 10 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 11 Si 0.95 44.60 27.47 68.60 1.88 46.48 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 15 C -0.10 -2.39 4.97 -19.86 -0.10 -2.49 16 16 C -0.08 -1.86 9.35 22.26 0.21 -1.65 16 17 C -0.16 -3.50 10.03 22.31 0.22 -3.28 16 18 C 0.08 1.71 7.30 22.38 0.16 1.88 16 19 F -0.15 -3.32 17.27 44.97 0.78 -2.55 16 20 C -0.15 -2.81 10.03 22.31 0.22 -2.59 16 21 C -0.08 -1.54 9.67 22.26 0.22 -1.33 16 22 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 1.38 7.87 -2.39 -0.02 1.36 16 25 H 0.05 1.80 7.87 -2.39 -0.02 1.78 16 26 H 0.04 1.70 8.08 -2.39 -0.02 1.68 16 27 H 0.02 1.12 7.20 -2.39 -0.02 1.11 16 28 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.13 3.33 7.77 -2.91 -0.02 3.31 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.16 2.13 8.04 -2.91 -0.02 2.11 16 Total: -1.00 -65.42 288.50 5.56 -59.86 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.03 Total: 4.98 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 2.96 Total: -34.96 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.30 Total: -58.52 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.39 Total: -15.30 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -65.42 5.56 -59.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205632146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.368 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds