Wall clock time and date at job start Sun Mar 29 2020 22:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47202 * 2 1 4 4 O 1.42898 * 109.47278 * 180.02562 * 3 2 1 5 5 C 1.35902 * 117.00259 * 180.02562 * 4 3 2 6 6 C 1.38711 * 120.03932 * 0.02562 * 5 4 3 7 7 C 1.38340 * 119.92000 * 179.97438 * 6 5 4 8 8 F 1.35100 * 120.00204 * 180.02562 * 7 6 5 9 9 C 1.38518 * 120.00043 * 0.02577 * 7 6 5 10 10 C 1.38207 * 120.08968 * 359.67571 * 9 7 6 11 11 C 1.38177 * 120.07522 * 0.60054 * 10 9 7 12 12 C 1.50703 * 120.00066 * 179.69806 * 11 10 9 13 13 C 1.50701 * 109.47064 * 264.72443 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 H 1.09003 * 109.47105 * 299.99740 * 1 2 3 22 22 H 1.09005 * 109.47411 * 59.99543 * 1 2 3 23 23 H 1.09001 * 109.47220 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46629 * 240.00460 * 2 1 3 25 25 H 1.08997 * 109.47126 * 120.00606 * 2 1 3 26 26 H 1.09003 * 109.46878 * 60.00121 * 3 2 1 27 27 H 1.09005 * 109.47311 * 300.00519 * 3 2 1 28 28 H 1.08001 * 120.04136 * 359.95591 * 6 5 4 29 29 H 1.08004 * 119.95152 * 180.02562 * 9 7 6 30 30 H 1.07997 * 119.96286 * 180.30266 * 10 9 7 31 31 H 1.09002 * 109.47152 * 144.72536 * 12 11 10 32 32 H 1.09001 * 109.46980 * 24.72636 * 12 11 10 33 33 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0860 2.6534 -0.0001 6 6 3.3314 3.8172 0.0014 7 6 3.9621 5.0485 0.0024 8 9 3.2287 6.1832 0.0044 9 6 5.3455 5.1181 0.0013 10 6 6.0976 3.9586 0.0060 11 6 5.4713 2.7270 -0.0007 12 6 6.2931 1.4637 -0.0025 13 6 6.4625 0.9766 -1.4185 14 1 6.0198 1.5270 -2.2355 15 6 7.1836 -0.1711 -1.6711 16 7 7.7231 -0.8410 -0.6763 17 14 7.3942 -0.7744 -3.4264 18 1 6.6961 0.1507 -4.3550 19 1 8.8395 -0.8175 -3.7649 20 1 6.8149 -2.1357 -3.5547 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 2.2528 3.7623 0.0015 29 1 5.8370 6.0798 0.0025 30 1 7.1761 4.0153 0.0101 31 1 5.7858 0.6995 0.5864 32 1 7.2721 1.6666 0.4316 33 1 8.2301 -1.6486 -0.8540 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057588.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:23 Heat of formation + Delta-G solvation = -97.152335 kcal Electronic energy + Delta-G solvation = -16585.849547 eV Core-core repulsion = 13717.973870 eV Total energy + Delta-G solvation = -2867.875677 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.87520 -41.11381 -38.44947 -35.38818 -34.76001 -32.84666 -31.12007 -28.72506 -27.40824 -25.19106 -23.70137 -22.68359 -21.79712 -19.39008 -18.49478 -17.83392 -17.22322 -16.86038 -16.70337 -16.49718 -16.00217 -15.39326 -15.01932 -14.75144 -14.38540 -14.31838 -13.65756 -13.30109 -13.10861 -12.98838 -12.86443 -12.62006 -12.44859 -12.13071 -12.12142 -11.93954 -11.49871 -11.46230 -11.44312 -10.56908 -9.75438 -9.01369 -8.15334 -6.27125 0.24075 0.39248 1.39346 1.39733 1.52871 2.30664 2.40608 2.72269 3.15020 3.26969 3.78496 3.94379 3.96936 4.05889 4.10333 4.28388 4.38156 4.47978 4.55507 4.74023 4.81763 5.04979 5.07336 5.12984 5.18114 5.18379 5.35422 5.37660 5.41778 5.76102 5.80557 5.91739 6.21462 6.56711 6.83630 7.39630 8.93773 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.015622 B = 0.008817 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.872868 B = 3175.082118 C = 4508.259295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.048 3.952 4 O -0.321 6.321 5 C 0.143 3.857 6 C -0.243 4.243 7 C 0.108 3.892 8 F -0.140 7.140 9 C -0.180 4.180 10 C -0.064 4.064 11 C -0.112 4.112 12 C 0.070 3.930 13 C -0.516 4.516 14 H 0.049 0.951 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.960 3.040 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.278 1.278 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.156 0.844 29 H 0.161 0.839 30 H 0.144 0.856 31 H 0.002 0.998 32 H 0.009 0.991 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.913 7.506 1.325 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C -0.027 4.027 4 O -0.234 6.234 5 C 0.097 3.903 6 C -0.263 4.263 7 C 0.089 3.911 8 F -0.119 7.119 9 C -0.199 4.199 10 C -0.082 4.082 11 C -0.113 4.113 12 C 0.033 3.967 13 C -0.554 4.554 14 H 0.067 0.933 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.785 3.215 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.204 1.204 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.174 0.826 29 H 0.178 0.822 30 H 0.162 0.838 31 H 0.020 0.980 32 H 0.027 0.973 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.779 7.201 1.363 13.873 hybrid contribution 0.147 -0.365 -0.680 0.786 sum -11.632 6.836 0.683 13.510 Atomic orbital electron populations 1.21649 0.91768 1.03282 1.02925 1.21512 0.97807 0.94050 1.02873 1.23162 0.77484 0.99913 1.02145 1.86272 1.22597 1.26590 1.87974 1.18654 0.91536 0.84263 0.95823 1.21168 1.01474 0.90579 1.13039 1.17322 0.89485 0.81233 1.03070 1.91459 1.77427 1.48882 1.94113 1.21184 0.91518 1.00335 1.06860 1.20890 1.00815 0.89800 0.96728 1.20032 0.91628 0.97523 1.02137 1.17860 0.92907 0.89554 0.96335 1.21318 1.32293 1.09105 0.92708 0.93260 1.25846 0.95335 0.96698 1.01391 1.70083 1.36008 1.18015 1.32928 0.85466 0.78109 0.78160 0.79737 1.19136 1.19979 1.20407 0.91313 0.91667 0.90910 0.92266 0.91736 0.90653 0.91264 0.82618 0.82167 0.83809 0.97977 0.97281 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 71.98 0.71 -1.75 16 2 C -0.12 -3.26 6.30 30.59 0.19 -3.06 16 3 C 0.05 1.38 4.74 71.98 0.34 1.72 16 4 O -0.32 -13.25 9.27 -92.45 -0.86 -14.10 16 5 C 0.14 5.83 6.66 22.50 0.15 5.97 16 6 C -0.24 -8.08 9.02 22.41 0.20 -7.87 16 7 C 0.11 3.44 7.30 22.36 0.16 3.60 16 8 F -0.14 -4.10 17.27 44.97 0.78 -3.33 16 9 C -0.18 -5.62 10.02 22.33 0.22 -5.39 16 10 C -0.06 -2.39 9.67 22.25 0.22 -2.18 16 11 C -0.11 -5.03 5.08 -19.76 -0.10 -5.13 16 12 C 0.07 3.83 4.83 29.10 0.14 3.97 16 13 C -0.52 -29.97 9.09 25.60 0.23 -29.74 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 15 C 0.01 0.29 5.46 84.66 0.46 0.75 16 16 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 17 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 1.85 7.66 -2.39 -0.02 1.83 16 27 H 0.07 1.80 7.66 -2.38 -0.02 1.78 16 28 H 0.16 4.23 6.30 -2.91 -0.02 4.21 16 29 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 31 H 0.00 0.12 7.69 -2.39 -0.02 0.10 16 32 H 0.01 0.50 8.05 -2.39 -0.02 0.49 16 33 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -66.28 289.00 6.26 -60.03 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.09 Total: 5.84 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 2.94 Total: -39.11 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.28 Total: -56.34 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.86 Total: -14.10 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.28 6.26 -60.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057588.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.127 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds