Wall clock time and date at job start Sun Mar 29 2020 22:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38171 * 120.00720 * 2 1 4 4 C 1.38209 * 120.08450 * 180.02562 * 3 2 1 5 5 C 1.38511 * 120.08286 * 0.26071 * 4 3 2 6 6 F 1.35100 * 119.99877 * 179.74437 * 5 4 3 7 7 C 1.38350 * 120.00607 * 359.48309 * 5 4 3 8 8 C 1.50701 * 120.03740 * 180.25808 * 7 5 4 9 9 C 1.52998 * 109.46907 * 270.25155 * 8 7 5 10 10 C 1.52998 * 109.47071 * 180.02562 * 9 8 7 11 11 C 1.50708 * 109.46967 * 180.02562 * 10 9 8 12 12 H 1.07991 * 120.00117 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99528 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00516 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99724 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47199 * 89.99450 * 15 13 11 17 17 H 1.48496 * 109.47142 * 209.99618 * 15 13 11 18 18 H 1.48497 * 109.47099 * 329.99923 * 15 13 11 19 19 C 1.38708 * 119.91631 * 0.51004 * 7 5 4 20 20 O 1.35902 * 120.03890 * 179.72017 * 19 7 5 21 21 H 1.08999 * 109.46931 * 90.00446 * 1 2 3 22 22 H 1.09002 * 109.47137 * 209.99607 * 1 2 3 23 23 H 1.08999 * 109.46959 * 330.00365 * 1 2 3 24 24 H 1.08006 * 119.95637 * 0.04205 * 3 2 1 25 25 H 1.08002 * 119.95546 * 179.97438 * 4 3 2 26 26 H 1.08992 * 109.47374 * 30.25814 * 8 7 5 27 27 H 1.09007 * 109.46770 * 150.25940 * 8 7 5 28 28 H 1.08997 * 109.48077 * 300.00660 * 9 8 7 29 29 H 1.09007 * 109.46765 * 60.00782 * 9 8 7 30 30 H 1.09005 * 109.46943 * 300.00123 * 10 9 8 31 31 H 1.08993 * 109.47501 * 60.00636 * 10 9 8 32 32 H 0.97002 * 119.99864 * 180.02562 * 14 13 11 33 33 H 0.96694 * 114.00152 * 270.02304 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1965 0.0000 4 6 3.5801 1.1984 -0.0005 5 6 4.2760 0.0008 -0.0065 6 9 5.6270 0.0046 -0.0123 7 6 3.5878 -1.1994 -0.0012 8 6 4.3442 -2.5028 -0.0018 9 6 4.5995 -2.9435 -1.4445 10 6 5.3670 -4.2671 -1.4452 11 6 5.6189 -4.7009 -2.8663 12 1 5.2666 -4.0936 -3.6868 13 6 6.2984 -5.8737 -3.1188 14 7 6.7271 -6.6136 -2.1196 15 14 6.6102 -6.4119 -4.8803 16 1 7.9042 -5.8525 -5.3472 17 1 6.6603 -7.8946 -4.9434 18 1 5.5139 -5.9161 -5.7507 19 6 2.2007 -1.2014 -0.0005 20 8 1.5221 -2.3789 -0.0010 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6574 2.1315 0.0007 25 1 4.1181 2.1348 -0.0010 26 1 5.2965 -2.3705 0.5116 27 1 3.7570 -3.2639 0.5121 28 1 3.6473 -3.0758 -1.9581 29 1 5.1868 -2.1824 -1.9584 30 1 6.3193 -4.1351 -0.9317 31 1 4.7795 -5.0280 -0.9315 32 1 7.2055 -7.4386 -2.2973 33 1 1.3256 -2.7192 -0.8845 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:46 Heat of formation + Delta-G solvation = -113.574741 kcal Electronic energy + Delta-G solvation = -16449.890905 eV Core-core repulsion = 13581.303099 eV Total energy + Delta-G solvation = -2868.587806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.90942 -40.97180 -37.47727 -36.66896 -34.73697 -32.92164 -31.43797 -28.56492 -27.38412 -25.55047 -23.28741 -22.44815 -21.48995 -19.54324 -18.48150 -18.17070 -17.47974 -16.65294 -16.52617 -15.98582 -15.66031 -15.52929 -14.86969 -14.72820 -14.34828 -14.10056 -13.89584 -13.44198 -13.04410 -12.90616 -12.81804 -12.65028 -12.48646 -12.23576 -12.22745 -11.73343 -11.54121 -11.33589 -11.13827 -10.57902 -9.65489 -9.39845 -8.21493 -6.33744 0.09325 0.14695 1.38739 1.40751 1.51843 2.39249 2.43902 3.07975 3.11233 3.52194 3.65640 3.79848 3.92800 4.26679 4.29951 4.42329 4.55929 4.74453 4.76568 4.86480 4.88907 4.97540 5.10543 5.18206 5.22117 5.27030 5.33788 5.47219 5.48966 5.69739 5.80209 5.86170 6.21652 6.76391 6.82592 7.35716 8.90490 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.032251 B = 0.005363 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.991028 B = 5219.847645 C = 5603.969507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.154 4.154 5 C 0.079 3.921 6 F -0.151 7.151 7 C -0.151 4.151 8 C -0.071 4.071 9 C -0.081 4.081 10 C 0.025 3.975 11 C -0.545 4.545 12 H 0.060 0.940 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.261 1.261 19 C 0.123 3.877 20 O -0.498 6.498 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.175 0.825 25 H 0.160 0.840 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.039 0.961 30 H -0.014 1.014 31 H -0.005 1.005 32 H 0.264 0.736 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.054 16.681 3.295 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.121 4.121 3 C -0.095 4.095 4 C -0.172 4.172 5 C 0.059 3.941 6 F -0.130 7.130 7 C -0.152 4.152 8 C -0.108 4.108 9 C -0.119 4.119 10 C -0.012 4.012 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.185 1.185 19 C 0.078 3.922 20 O -0.311 6.311 21 H 0.102 0.898 22 H 0.085 0.915 23 H 0.108 0.892 24 H 0.192 0.808 25 H 0.177 0.823 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.004 0.996 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -12.896 16.567 3.938 21.361 hybrid contribution 1.082 -0.964 -1.055 1.792 sum -11.814 15.604 2.883 19.783 Atomic orbital electron populations 1.20726 0.88069 1.03990 1.03497 1.20612 0.98622 0.91624 1.01211 1.21168 0.92333 0.98708 0.97340 1.21427 0.95742 0.96578 1.03477 1.17763 0.76636 0.94718 1.04935 1.91458 1.29999 1.97412 1.94099 1.20422 0.94943 0.94833 1.05048 1.20367 0.98758 0.93523 0.98172 1.21306 0.99453 0.96925 0.94213 1.19008 0.93910 0.92552 0.95746 1.21674 1.36169 1.06923 0.93505 0.92191 1.26021 0.95241 0.96587 1.02017 1.70110 1.39172 1.14844 1.33301 0.85410 0.78933 0.77374 0.79107 1.19869 1.20514 1.18504 1.17992 0.87712 0.86397 1.00101 1.84688 1.75353 1.35941 1.35087 0.89816 0.91465 0.89228 0.80810 0.82278 0.92693 0.90741 0.92373 0.94172 0.99597 0.98625 0.92706 0.73436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.79 71.24 0.70 -0.81 16 2 C -0.12 -2.48 5.89 -19.76 -0.12 -2.60 16 3 C -0.08 -1.38 9.69 22.25 0.22 -1.16 16 4 C -0.15 -3.39 10.02 22.33 0.22 -3.17 16 5 C 0.08 2.42 7.24 22.36 0.16 2.58 16 6 F -0.15 -5.27 16.48 44.97 0.74 -4.53 16 7 C -0.15 -4.94 5.15 -19.72 -0.10 -5.04 16 8 C -0.07 -2.75 4.94 29.85 0.15 -2.60 16 9 C -0.08 -3.59 5.13 30.59 0.16 -3.43 16 10 C 0.02 1.38 4.97 29.85 0.15 1.53 16 11 C -0.54 -32.09 9.11 25.60 0.23 -31.85 16 12 H 0.06 3.37 7.74 -2.92 -0.02 3.35 16 13 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 14 N -0.93 -58.40 13.29 21.45 0.28 -58.11 16 15 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 19 C 0.12 3.38 6.65 22.50 0.15 3.52 16 20 O -0.50 -13.14 11.59 -92.44 -1.07 -14.22 16 21 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.07 1.08 7.53 -2.39 -0.02 1.06 16 23 H 0.09 0.87 8.09 -2.39 -0.02 0.86 16 24 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 25 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 26 H 0.05 2.25 7.65 -2.39 -0.02 2.23 16 27 H 0.07 2.90 7.53 -2.38 -0.02 2.88 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 30 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 31 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.41 8.01 9.06 -74.06 -0.67 7.34 16 Total: -1.00 -71.05 289.01 4.80 -66.25 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.44 Total: 6.17 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 2.38 Total: -42.63 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.28 Total: -58.11 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.07 Total: -14.22 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.74 Total: -4.53 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -71.05 4.80 -66.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.324 kcal (2) G-P(sol) polarization free energy of solvation -71.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds