Wall clock time and date at job start Sun Mar 29 2020 22:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 C 1.50697 * 109.47353 * 179.97438 * 15 14 12 17 17 C 1.35354 * 126.74786 * 94.71375 * 16 15 14 18 18 N 1.35309 * 106.17345 * 179.85162 * 17 16 15 19 19 C 1.46503 * 125.86773 * 180.11665 * 18 17 16 20 20 N 1.28713 * 108.26411 * 0.41533 * 18 17 16 21 21 N 1.28638 * 110.17842 * 359.73530 * 20 18 17 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 26 26 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 27 27 H 1.08996 * 109.46956 * 300.00500 * 15 14 12 28 28 H 1.09001 * 109.47062 * 59.99678 * 15 14 12 29 29 H 1.08001 * 126.91369 * 0.02562 * 17 16 15 30 30 H 1.08996 * 109.46914 * 270.32331 * 19 18 17 31 31 H 1.08990 * 109.47205 * 30.32807 * 19 18 17 32 32 H 1.09006 * 109.47209 * 150.32924 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 6 1.6918 -0.2305 -4.8812 17 6 2.3462 0.7158 -5.5943 18 7 1.5196 1.0628 -6.6078 19 6 1.8041 2.0571 -7.6455 20 7 0.4377 0.3738 -6.4999 21 7 0.5089 -0.4071 -5.4801 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7096 1.1617 3.4844 26 1 1.1487 0.5386 -2.5436 27 1 3.2846 -0.9411 -3.6510 28 1 1.8310 -1.9682 -3.6507 29 1 3.3312 1.1119 -5.3961 30 1 1.4655 3.0378 -7.3114 31 1 2.8770 2.0880 -7.8346 32 1 1.2812 1.7852 -8.5624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328384596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:26 Heat of formation + Delta-G solvation = 31.665620 kcal Electronic energy + Delta-G solvation = -16359.248916 eV Core-core repulsion = 13549.171917 eV Total energy + Delta-G solvation = -2810.076999 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.29398 -40.49144 -36.43853 -35.73388 -35.16014 -32.89948 -31.87486 -28.91373 -27.64852 -27.13749 -24.26223 -23.04523 -22.28874 -21.10763 -18.56000 -18.20059 -17.64038 -17.54997 -16.72207 -16.27576 -16.20058 -15.58511 -14.96600 -14.61681 -14.29692 -14.02638 -13.87882 -13.56099 -13.33781 -12.94355 -12.69080 -12.66833 -12.57009 -12.18271 -11.97848 -11.87796 -11.10267 -11.02555 -10.69356 -10.46987 -10.12314 -9.97591 -8.12092 -6.22552 0.57914 1.25098 1.43986 1.45951 1.54077 1.54545 1.95207 2.43254 2.69289 3.17587 3.23943 3.71168 3.96473 4.13895 4.32226 4.37162 4.52861 4.67187 4.70550 4.76972 4.91477 4.96502 5.01965 5.04512 5.51229 5.54483 5.64811 5.76598 5.95015 6.22878 6.73133 6.88064 7.42225 7.43177 7.54765 8.93737 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.055770 B = 0.004582 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.937268 B = 6108.854971 C = 6270.915608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.025 3.975 3 H 0.045 0.955 4 C -0.529 4.529 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.525 3.475 13 O -0.583 6.583 14 N -0.721 5.721 15 C 0.212 3.788 16 C -0.056 4.056 17 C -0.006 4.006 18 N -0.286 5.286 19 C 0.068 3.932 20 N -0.115 5.115 21 N -0.296 5.296 22 H 0.071 0.929 23 H 0.021 0.979 24 H 0.045 0.955 25 H 0.264 0.736 26 H 0.406 0.594 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.237 0.763 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 6.824 -19.843 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.004 3.996 3 H 0.062 0.938 4 C -0.567 4.567 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.203 1.203 12 C 0.314 3.686 13 O -0.463 6.463 14 N -0.375 5.375 15 C 0.087 3.913 16 C -0.195 4.195 17 C -0.159 4.159 18 N -0.079 5.079 19 C -0.070 4.070 20 N -0.095 5.095 21 N -0.163 5.163 22 H 0.090 0.910 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.241 0.759 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.253 0.747 30 H 0.127 0.873 31 H 0.152 0.848 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.656 5.979 -20.317 21.344 hybrid contribution 0.839 0.115 1.206 1.474 sum 3.496 6.094 -19.111 20.361 Atomic orbital electron populations 1.21557 0.95510 0.99285 1.01406 1.18803 0.94954 0.96179 0.89692 0.93760 1.21279 1.31625 1.12798 0.91023 0.93049 1.25614 0.95179 0.95743 1.01479 1.69948 1.37255 1.23653 1.24337 0.85634 0.78784 0.78637 0.78712 1.19886 1.20060 1.20297 1.21489 0.78214 0.83689 0.85212 1.90509 1.39975 1.28356 1.87411 1.46030 1.54437 1.32456 1.04538 1.19262 0.99130 0.94470 0.78458 1.21921 0.93526 1.02718 1.01358 1.24024 1.01283 0.99927 0.90705 1.47729 1.10657 1.28127 1.21399 1.22806 1.06457 0.89283 0.88487 1.78245 1.08790 1.06116 1.16357 1.75056 1.19573 1.17955 1.03741 0.90986 0.96008 0.93654 0.92635 0.75909 0.88525 0.92100 0.74682 0.87349 0.84812 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.87 71.98 0.64 -5.07 16 2 C 0.02 1.28 2.64 -12.29 -0.03 1.24 16 3 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.53 -30.94 8.37 25.60 0.21 -30.72 16 5 H 0.05 3.19 6.75 -2.91 -0.02 3.17 16 6 C 0.02 1.06 5.30 84.66 0.45 1.51 16 7 N -0.91 -51.81 11.32 21.45 0.24 -51.57 16 8 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 9 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 C 0.52 24.43 7.15 87.66 0.63 25.06 16 13 O -0.58 -31.10 15.46 -3.04 -0.05 -31.15 16 14 N -0.72 -25.60 5.44 -466.80 -2.54 -28.14 16 15 C 0.21 6.39 6.23 85.63 0.53 6.92 16 16 C -0.06 -1.46 6.61 41.60 0.28 -1.19 16 17 C -0.01 -0.11 11.55 83.49 0.96 0.86 16 18 N -0.29 -4.81 3.74 -369.24 -1.38 -6.19 16 19 C 0.07 0.30 11.39 127.77 1.46 1.75 16 20 N -0.12 -3.05 13.17 37.02 0.49 -2.57 16 21 N -0.30 -9.28 12.41 -48.60 -0.60 -9.88 16 22 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 23 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.04 1.81 7.56 -2.38 -0.02 1.79 16 25 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 26 H 0.41 13.00 7.88 -92.70 -0.73 12.27 16 27 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.24 1.78 8.06 -2.91 -0.02 1.75 16 30 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.13 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 Total: -1.00 -77.30 282.14 3.72 -73.59 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.41 Total: 8.29 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.12 Total: 0.36 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -3.79 Total: -98.34 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.05 Total: -31.15 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -77.30 3.72 -73.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328384596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.253 kcal (2) G-P(sol) polarization free energy of solvation -77.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds