Wall clock time and date at job start Sun Mar 29 2020 22:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46684 * 2 1 4 4 N 1.28713 * 125.86803 * 270.02009 * 3 2 1 5 5 N 1.28636 * 110.18004 * 179.97438 * 4 3 2 6 6 C 1.33776 * 108.88190 * 359.76769 * 5 4 3 7 7 C 1.50704 * 126.75080 * 180.23678 * 6 5 4 8 8 C 1.35310 * 125.86788 * 90.00656 * 3 2 1 9 9 C 1.50703 * 126.91292 * 359.97438 * 8 3 2 10 10 N 1.46505 * 109.47064 * 90.00138 * 9 8 3 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 8 12 12 O 1.21685 * 120.00526 * 0.02562 * 11 10 9 13 13 C 1.46381 * 119.99614 * 180.02562 * 11 10 9 14 14 H 1.07993 * 120.00106 * 0.02562 * 13 11 10 15 15 C 1.40051 * 119.99693 * 180.02562 * 13 11 10 16 16 N 1.30666 * 120.00364 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99754 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46872 * 60.00052 * 17 15 13 19 19 H 1.48494 * 109.46914 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47008 * 300.00175 * 17 15 13 21 21 H 1.08996 * 109.47110 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.46911 * 300.00066 * 1 2 3 23 23 H 1.08998 * 109.47280 * 59.99750 * 1 2 3 24 24 H 1.09000 * 109.46807 * 240.00055 * 2 1 3 25 25 H 1.08998 * 109.46989 * 119.99786 * 2 1 3 26 26 H 1.09004 * 109.46719 * 270.16171 * 7 6 5 27 27 H 1.08998 * 109.46997 * 30.15731 * 7 6 5 28 28 H 1.08998 * 109.47102 * 150.15870 * 7 6 5 29 29 H 1.09002 * 109.47152 * 330.00221 * 9 8 3 30 30 H 1.09001 * 109.46980 * 210.00321 * 9 8 3 31 31 H 0.96996 * 119.99606 * 0.02562 * 10 9 8 32 32 H 0.97002 * 120.00059 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2693 2.0924 -1.0430 5 7 2.6816 3.2602 -0.6952 6 6 2.7017 3.3322 0.6405 7 6 3.1134 4.5187 1.4735 8 6 2.2826 2.1287 1.0965 9 6 2.1336 1.7082 2.5360 10 7 3.3874 1.1112 3.0027 11 6 3.4887 0.6598 4.2685 12 8 2.5386 0.7477 5.0237 13 6 4.7416 0.0638 4.7349 14 1 5.5850 -0.0138 4.0649 15 6 4.8467 -0.4057 6.0502 16 7 3.8264 -0.3114 6.8611 17 14 6.4459 -1.1657 6.6457 18 1 7.5403 -0.1682 6.5323 19 1 6.2991 -1.5797 8.0642 20 1 6.7697 -2.3526 5.8140 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 4.1833 4.4670 1.6755 27 1 2.8899 5.4378 0.9320 28 1 2.5648 4.5093 2.4153 29 1 1.3297 0.9768 2.6195 30 1 1.8967 2.5797 3.1464 31 1 4.1449 1.0415 2.4008 32 1 3.8991 -0.6369 7.7720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329031654.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:52 Heat of formation + Delta-G solvation = 46.137611 kcal Electronic energy + Delta-G solvation = -16801.669151 eV Core-core repulsion = 13992.219705 eV Total energy + Delta-G solvation = -2809.449446 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.13487 -37.44296 -35.54705 -34.13581 -32.55558 -31.78647 -30.63445 -28.07123 -26.66825 -25.06006 -24.23146 -21.06070 -20.56656 -19.80078 -17.55578 -16.84150 -16.14658 -15.40368 -14.85083 -14.69123 -14.12660 -13.90532 -13.52721 -13.19547 -13.04179 -12.64160 -12.40632 -12.30690 -12.03773 -11.64238 -11.53929 -11.37097 -11.21456 -10.98692 -10.57604 -10.50305 -10.33068 -9.85437 -8.92954 -8.87337 -7.73093 -7.71569 -6.27917 -4.74225 1.68708 2.45816 2.67945 3.10791 3.16365 3.18009 4.04351 4.41295 4.48770 4.56716 4.72594 4.84376 4.99418 5.05573 5.13158 5.28317 5.41783 5.59306 5.73176 5.80036 5.84720 5.96864 6.09464 6.14931 6.26549 6.48677 6.74389 7.34943 7.74659 7.90410 8.21199 8.67746 8.93337 9.36658 10.48151 10.66073 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.030533 B = 0.006086 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.823852 B = 4599.469270 C = 4918.456173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.281 5.281 4 N -0.092 5.092 5 N -0.275 5.275 6 C -0.013 4.013 7 C -0.065 4.065 8 C -0.019 4.019 9 C 0.206 3.794 10 N -0.763 5.763 11 C 0.556 3.444 12 O -0.579 6.579 13 C -0.544 4.544 14 H 0.067 0.933 15 C 0.089 3.911 16 N -0.767 5.767 17 Si 0.908 3.092 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.268 1.268 21 H 0.084 0.916 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.382 0.618 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.932 1.241 -9.813 10.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.014 4.014 3 N -0.076 5.076 4 N -0.071 5.071 5 N -0.142 5.142 6 C -0.152 4.152 7 C -0.124 4.124 8 C -0.151 4.151 9 C 0.079 3.921 10 N -0.420 5.420 11 C 0.361 3.639 12 O -0.461 6.461 13 C -0.581 4.581 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.395 5.395 17 Si 0.733 3.267 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.193 1.193 21 H 0.103 0.897 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.123 0.877 25 H 0.128 0.872 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.213 0.787 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.737 1.277 -10.615 11.326 hybrid contribution 1.074 -0.665 1.016 1.621 sum -2.663 0.612 -9.600 9.981 Atomic orbital electron populations 1.22151 0.93077 1.03901 1.03507 1.22137 0.96315 0.76829 1.06117 1.47304 1.42569 1.13286 1.04447 1.78189 1.17609 0.99195 1.12092 1.75003 1.16561 1.10570 1.12033 1.21823 1.05539 0.96523 0.91303 1.20074 1.02079 0.92712 0.97528 1.22278 1.07762 0.92861 0.92217 1.19253 0.90398 0.98732 0.83738 1.46280 1.12569 1.67955 1.15245 1.18234 0.89404 0.77867 0.78442 1.90614 1.40649 1.60728 1.54136 1.20823 0.97665 1.42119 0.97469 0.91433 1.25694 0.97081 0.94062 0.96325 1.69994 1.29628 1.34387 1.05491 0.86422 0.82357 0.79919 0.78013 1.19200 1.20478 1.19290 0.89676 0.91355 0.91537 0.87675 0.87175 0.90526 0.90920 0.90450 0.92085 0.90320 0.78684 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.24 37.16 0.38 -1.25 16 2 C 0.11 1.22 6.75 -4.04 -0.03 1.19 16 3 N -0.28 -4.22 3.34 -57.04 -0.19 -4.41 16 4 N -0.09 -1.55 13.16 60.35 0.79 -0.76 16 5 N -0.28 -4.84 12.41 33.29 0.41 -4.43 16 6 C -0.01 -0.21 7.25 -82.77 -0.60 -0.81 16 7 C -0.07 -0.87 10.27 36.01 0.37 -0.50 16 8 C -0.02 -0.31 6.36 -82.09 -0.52 -0.83 16 9 C 0.21 3.70 5.56 -5.19 -0.03 3.67 16 10 N -0.76 -16.02 5.54 -62.90 -0.35 -16.37 16 11 C 0.56 14.93 7.75 -12.99 -0.10 14.83 16 12 O -0.58 -17.73 15.02 5.20 0.08 -17.65 16 13 C -0.54 -14.74 9.54 -35.63 -0.34 -15.08 16 14 H 0.07 1.69 7.85 -52.49 -0.41 1.27 16 15 C 0.09 2.38 5.50 -17.37 -0.10 2.29 16 16 N -0.77 -22.18 11.83 55.55 0.66 -21.52 16 17 Si 0.91 19.51 29.56 -169.99 -5.02 14.49 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.11 1.30 7.72 -51.93 -0.40 0.90 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.00 7.31 -51.93 -0.38 0.62 16 29 H 0.06 1.10 7.81 -51.93 -0.41 0.70 16 30 H 0.08 1.46 7.30 -51.93 -0.38 1.08 16 31 H 0.38 7.41 8.44 -40.82 -0.34 7.07 16 32 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 LS Contribution 284.97 15.07 4.29 4.29 Total: -1.00 -33.74 284.97 -4.28 -38.02 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -3.99 Total: 4.84 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.96 Total: 3.51 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 1.33 Total: -47.49 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.08 Total: -17.65 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.74 -4.28 -38.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329031654.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.161 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds