Wall clock time and date at job start Sun Mar 29 2020 22:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31259 * 1 3 3 Si 1.86799 * 120.00100 * 2 1 4 4 H 1.48499 * 109.46954 * 269.99764 * 3 2 1 5 5 H 1.48498 * 109.47150 * 29.99578 * 3 2 1 6 6 H 1.48498 * 109.47175 * 149.99497 * 3 2 1 7 7 C 1.39012 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99997 * 180.02562 * 7 2 1 9 9 N 1.37566 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.36670 * 126.88707 * 180.28358 * 9 7 2 11 11 C 1.34947 * 106.72796 * 180.14560 * 10 9 7 12 12 C 1.50691 * 125.48912 * 179.84283 * 11 10 9 13 13 H 1.09007 * 109.47350 * 4.72291 * 12 11 10 14 14 N 1.46903 * 109.47366 * 244.72147 * 12 11 10 15 15 C 1.53001 * 109.47418 * 124.71792 * 12 11 10 16 16 H 1.09007 * 110.33051 * 57.75023 * 15 12 11 17 17 C 1.54472 * 110.37693 * 180.02562 * 15 12 11 18 18 C 1.54505 * 104.06681 * 142.81150 * 17 15 12 19 19 C 1.54487 * 104.06179 * 0.02562 * 18 17 15 20 20 O 1.44421 * 104.79872 * 336.02098 * 19 18 17 21 21 N 1.33460 * 109.02281 * 359.58044 * 11 10 9 22 22 N 1.28759 * 109.98986 * 0.26398 * 21 11 10 23 23 H 0.97000 * 119.99411 * 0.02562 * 1 2 3 24 24 H 1.07997 * 126.63572 * 359.97438 * 10 9 7 25 25 H 1.00900 * 110.99893 * 299.99774 * 14 12 11 26 26 H 1.00896 * 110.99720 * 63.95633 * 14 12 11 27 27 H 1.09003 * 110.51251 * 24.16627 * 17 15 12 28 28 H 1.09005 * 110.63087 * 261.51584 * 17 15 12 29 29 H 1.09003 * 110.51737 * 241.36166 * 18 17 15 30 30 H 1.08999 * 110.63305 * 118.70297 * 18 17 15 31 31 H 1.08997 * 110.37332 * 94.85398 * 19 18 17 32 32 H 1.09004 * 110.37288 * 217.19057 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.4942 2.0463 -1.4001 5 1 1.4441 2.6527 0.6999 6 1 3.5441 1.4402 0.7001 7 6 2.0076 -1.2039 0.0005 8 1 3.0876 -1.2039 0.0010 9 7 1.3198 -2.3953 0.0005 10 6 1.8562 -3.6523 0.0064 11 6 0.8201 -4.5168 0.0006 12 6 0.9345 -6.0194 0.0006 13 1 1.9828 -6.3040 0.0906 14 7 0.3885 -6.5521 -1.2548 15 6 0.1478 -6.5908 1.1820 16 1 -0.8960 -6.2811 1.1272 17 6 0.2516 -8.1319 1.2023 18 6 0.3318 -8.4831 2.7047 19 6 0.2663 -7.1126 3.4146 20 8 0.7346 -6.1648 2.4307 21 7 -0.3222 -3.8267 0.0007 22 7 -0.0733 -2.5634 0.0007 23 1 -0.4849 0.8401 -0.0004 24 1 2.9063 -3.9048 0.0116 25 1 -0.5831 -6.3016 -1.3617 26 1 0.9315 -6.2406 -2.0461 27 1 1.1526 -8.4609 0.6845 28 1 -0.6327 -8.5824 0.7514 29 1 1.2725 -8.9856 2.9299 30 1 -0.5128 -9.1061 2.9992 31 1 -0.7594 -6.8837 3.7039 32 1 0.9182 -7.1061 4.2881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330751052.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:33 Heat of formation + Delta-G solvation = 39.248079 kcal Electronic energy + Delta-G solvation = -16976.294665 eV Core-core repulsion = 14166.546467 eV Total energy + Delta-G solvation = -2809.748199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16940 -38.94569 -34.90227 -33.75572 -31.67426 -31.21912 -28.83068 -28.38182 -25.72071 -23.88411 -21.88096 -21.29328 -20.33150 -19.56450 -17.50674 -16.19086 -15.71538 -15.50539 -15.25721 -14.58817 -14.10449 -13.80438 -13.55708 -13.31553 -13.00991 -12.65259 -11.93453 -11.66477 -11.45593 -11.39488 -11.26779 -11.00468 -10.79137 -10.59665 -10.33876 -9.92433 -9.73407 -9.38034 -9.15112 -8.67914 -8.36820 -7.34410 -6.80331 -4.60233 2.83785 2.96193 3.02274 3.35844 3.70295 4.06069 4.21264 4.67378 4.83244 4.89730 5.00015 5.13706 5.38125 5.46442 5.58791 5.77752 5.91113 5.93420 5.98208 6.08735 6.21406 6.21693 6.37013 6.53938 6.78702 6.93851 7.08134 7.26124 7.57478 7.79328 7.90773 7.93278 8.53127 9.15181 10.16649 10.22943 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.044732 B = 0.005875 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.799045 B = 4764.862660 C = 4988.928417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.047 3.953 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.316 4.316 8 H 0.120 0.880 9 N -0.148 5.148 10 C -0.107 4.107 11 C -0.104 4.104 12 C 0.196 3.804 13 H 0.084 0.916 14 N -0.833 5.833 15 C 0.094 3.906 16 H 0.069 0.931 17 C -0.135 4.135 18 C -0.158 4.158 19 C 0.043 3.957 20 O -0.360 6.360 21 N -0.324 5.324 22 N -0.092 5.092 23 H 0.282 0.718 24 H 0.152 0.848 25 H 0.343 0.657 26 H 0.342 0.658 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.935 -9.803 1.988 10.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.172 4.172 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.452 4.452 8 H 0.137 0.863 9 N 0.081 4.919 10 C -0.262 4.262 11 C -0.252 4.252 12 C 0.083 3.917 13 H 0.102 0.898 14 N -0.362 5.362 15 C 0.035 3.965 16 H 0.087 0.913 17 C -0.173 4.173 18 C -0.196 4.196 19 C -0.034 4.034 20 O -0.278 6.278 21 N -0.184 5.184 22 N -0.069 5.069 23 H 0.092 0.908 24 H 0.169 0.831 25 H 0.155 0.845 26 H 0.154 0.846 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.565 -9.513 2.340 9.920 hybrid contribution 1.258 1.299 -0.148 1.815 sum 2.823 -8.213 2.192 8.957 Atomic orbital electron populations 1.70150 1.06414 1.28986 1.33293 1.25775 0.95787 1.00798 0.94869 0.85701 0.79462 0.79124 0.79221 1.19278 1.19785 1.18496 1.20131 0.92179 0.80662 1.52267 0.86287 1.46678 1.06845 1.04479 1.33893 1.22330 0.98955 0.85201 1.19675 1.21466 0.89803 0.96545 1.17401 1.19319 0.97948 0.85936 0.88535 0.89783 1.59084 1.08043 1.65144 1.03929 1.22805 0.97184 0.91817 0.84706 0.91292 1.22835 1.03171 0.96247 0.95070 1.22986 1.02187 0.98032 0.96381 1.23342 0.99391 0.87839 0.92876 1.89213 1.70979 1.50350 1.17296 1.73924 1.25252 1.00900 1.18344 1.82514 0.88837 1.06811 1.28728 0.90766 0.83051 0.84521 0.84584 0.90482 0.90818 0.91149 0.91158 0.92811 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.99 11.89 55.50 0.66 -20.33 16 2 C 0.05 1.20 5.50 -17.51 -0.10 1.10 16 3 Si 0.94 18.47 29.55 -169.99 -5.02 13.45 16 4 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.32 -8.34 10.31 -14.69 -0.15 -8.50 16 8 H 0.12 2.80 7.83 -52.48 -0.41 2.39 16 9 N -0.15 -4.13 3.78 -11.47 -0.04 -4.17 16 10 C -0.11 -2.62 11.45 -16.56 -0.19 -2.81 16 11 C -0.10 -2.43 5.71 -83.06 -0.47 -2.91 16 12 C 0.20 3.62 2.90 -68.87 -0.20 3.42 16 13 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 14 N -0.83 -13.22 8.85 -5.65 -0.05 -13.27 16 15 C 0.09 1.65 2.93 -25.96 -0.08 1.57 16 16 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 17 C -0.14 -1.84 6.28 -25.17 -0.16 -2.00 16 18 C -0.16 -1.88 7.09 -25.16 -0.18 -2.06 16 19 C 0.04 0.61 7.63 37.94 0.29 0.90 16 20 O -0.36 -6.93 11.12 -35.23 -0.39 -7.33 16 21 N -0.32 -8.75 12.29 33.16 0.41 -8.35 16 22 N -0.09 -2.74 11.73 60.35 0.71 -2.03 16 23 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.15 3.19 8.06 -52.49 -0.42 2.77 16 25 H 0.34 5.68 8.99 -39.29 -0.35 5.32 16 26 H 0.34 5.17 9.06 -39.29 -0.36 4.81 16 27 H 0.08 1.03 7.87 -51.93 -0.41 0.62 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 277.40 15.07 4.18 4.18 Total: -1.00 -31.80 277.40 -4.83 -36.63 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -4.04 Total: 12.51 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -1.23 Total: -11.29 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 1.68 Total: -48.16 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.39 Total: -7.33 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.80 -4.83 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330751052.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.882 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds