Wall clock time and date at job start Sun Mar 29 2020 22:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31259 * 1 3 3 Si 1.86799 * 120.00100 * 2 1 4 4 H 1.48499 * 109.46954 * 269.99764 * 3 2 1 5 5 H 1.48498 * 109.47150 * 29.99578 * 3 2 1 6 6 H 1.48498 * 109.47175 * 149.99497 * 3 2 1 7 7 C 1.39012 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99997 * 180.02562 * 7 2 1 9 9 N 1.37566 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.36670 * 126.88707 * 180.28358 * 9 7 2 11 11 C 1.34947 * 106.72796 * 180.14560 * 10 9 7 12 12 C 1.50691 * 125.48912 * 179.84283 * 11 10 9 13 13 H 1.09007 * 109.47350 * 4.72291 * 12 11 10 14 14 N 1.46903 * 109.47366 * 244.72147 * 12 11 10 15 15 C 1.53001 * 109.47418 * 124.71792 * 12 11 10 16 16 H 1.09007 * 110.33051 * 57.75023 * 15 12 11 17 17 C 1.54472 * 110.37693 * 180.02562 * 15 12 11 18 18 C 1.54505 * 104.06681 * 142.81150 * 17 15 12 19 19 C 1.54487 * 104.06179 * 0.02562 * 18 17 15 20 20 O 1.44421 * 104.79872 * 336.02098 * 19 18 17 21 21 N 1.33460 * 109.02281 * 359.58044 * 11 10 9 22 22 N 1.28759 * 109.98986 * 0.26398 * 21 11 10 23 23 H 0.97000 * 119.99411 * 0.02562 * 1 2 3 24 24 H 1.07997 * 126.63572 * 359.97438 * 10 9 7 25 25 H 1.00900 * 110.99893 * 299.99774 * 14 12 11 26 26 H 1.00896 * 110.99720 * 63.95633 * 14 12 11 27 27 H 1.09003 * 110.51251 * 24.16627 * 17 15 12 28 28 H 1.09005 * 110.63087 * 261.51584 * 17 15 12 29 29 H 1.09003 * 110.51737 * 241.36166 * 18 17 15 30 30 H 1.08999 * 110.63305 * 118.70297 * 18 17 15 31 31 H 1.08997 * 110.37332 * 94.85398 * 19 18 17 32 32 H 1.09004 * 110.37288 * 217.19057 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.4942 2.0463 -1.4001 5 1 1.4441 2.6527 0.6999 6 1 3.5441 1.4402 0.7001 7 6 2.0076 -1.2039 0.0005 8 1 3.0876 -1.2039 0.0010 9 7 1.3198 -2.3953 0.0005 10 6 1.8562 -3.6523 0.0064 11 6 0.8201 -4.5168 0.0006 12 6 0.9345 -6.0194 0.0006 13 1 1.9828 -6.3040 0.0906 14 7 0.3885 -6.5521 -1.2548 15 6 0.1478 -6.5908 1.1820 16 1 -0.8960 -6.2811 1.1272 17 6 0.2516 -8.1319 1.2023 18 6 0.3318 -8.4831 2.7047 19 6 0.2663 -7.1126 3.4146 20 8 0.7346 -6.1648 2.4307 21 7 -0.3222 -3.8267 0.0007 22 7 -0.0733 -2.5634 0.0007 23 1 -0.4849 0.8401 -0.0004 24 1 2.9063 -3.9048 0.0116 25 1 -0.5831 -6.3016 -1.3617 26 1 0.9315 -6.2406 -2.0461 27 1 1.1526 -8.4609 0.6845 28 1 -0.6327 -8.5824 0.7514 29 1 1.2725 -8.9856 2.9299 30 1 -0.5128 -9.1061 2.9992 31 1 -0.7594 -6.8837 3.7039 32 1 0.9182 -7.1061 4.2881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330751052.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:33 Heat of formation + Delta-G solvation = 14.033789 kcal Electronic energy + Delta-G solvation = -16977.388039 eV Core-core repulsion = 14166.546467 eV Total energy + Delta-G solvation = -2810.841572 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09690 -40.26152 -36.53247 -35.53647 -33.24980 -32.81779 -30.48504 -29.80049 -27.66531 -25.33151 -23.54131 -22.86419 -21.68316 -21.38325 -19.33692 -17.51730 -17.48981 -16.96666 -16.53609 -16.18479 -15.74930 -15.40865 -15.15949 -14.86299 -14.43736 -14.06996 -13.74087 -13.34805 -13.04799 -12.80229 -12.48505 -12.21787 -12.10040 -12.04375 -11.78550 -11.61265 -11.40406 -11.14725 -10.65903 -10.64945 -9.87491 -9.26211 -8.71488 -6.64541 1.09264 1.35280 1.55229 1.62661 2.04876 2.17435 2.76273 2.90170 2.93882 3.75012 3.84620 3.95411 4.14023 4.18427 4.25875 4.44553 4.51040 4.61953 4.68720 4.83664 4.90033 4.93979 5.04097 5.11888 5.21848 5.23801 5.35089 5.90551 5.94857 6.02845 6.18844 6.53589 6.58488 7.17299 8.20579 8.29955 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.044732 B = 0.005875 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.799045 B = 4764.862660 C = 4988.928417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C -0.001 4.001 3 Si 1.029 2.971 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.243 1.243 7 C -0.346 4.346 8 H 0.144 0.856 9 N -0.163 5.163 10 C -0.124 4.124 11 C -0.091 4.091 12 C 0.200 3.800 13 H 0.099 0.901 14 N -0.814 5.814 15 C 0.091 3.909 16 H 0.042 0.958 17 C -0.126 4.126 18 C -0.147 4.147 19 C 0.032 3.968 20 O -0.400 6.400 21 N -0.348 5.348 22 N -0.153 5.153 23 H 0.287 0.713 24 H 0.184 0.816 25 H 0.340 0.660 26 H 0.348 0.652 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.719 -10.727 2.180 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.216 4.216 3 Si 0.845 3.155 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.166 1.166 7 C -0.482 4.482 8 H 0.161 0.839 9 N 0.065 4.935 10 C -0.278 4.278 11 C -0.241 4.241 12 C 0.085 3.915 13 H 0.117 0.883 14 N -0.342 5.342 15 C 0.033 3.967 16 H 0.060 0.940 17 C -0.163 4.163 18 C -0.184 4.184 19 C -0.045 4.045 20 O -0.319 6.319 21 N -0.207 5.207 22 N -0.129 5.129 23 H 0.097 0.903 24 H 0.201 0.799 25 H 0.151 0.849 26 H 0.161 0.839 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.330 -10.484 2.526 11.286 hybrid contribution 0.716 1.508 -0.188 1.680 sum 4.045 -8.976 2.338 10.119 Atomic orbital electron populations 1.70308 1.08777 1.30463 1.34336 1.27108 0.96528 1.04831 0.93134 0.84465 0.78262 0.73003 0.79723 1.18231 1.19576 1.16614 1.20963 0.93564 0.81003 1.52691 0.83903 1.47018 1.06696 1.05879 1.33890 1.23082 1.00823 0.84531 1.19407 1.22359 0.88484 0.99000 1.14243 1.19495 0.99203 0.82698 0.90058 0.88331 1.59078 1.07809 1.64012 1.03292 1.22770 0.95267 0.94649 0.84043 0.94033 1.22770 1.04086 0.92782 0.96700 1.22961 1.04213 0.96792 0.94449 1.23621 0.99591 0.88475 0.92810 1.89165 1.71487 1.52590 1.18653 1.73876 1.26721 1.00664 1.19434 1.82465 0.90325 1.08102 1.31992 0.90295 0.79861 0.84869 0.83896 0.89718 0.89658 0.89372 0.88851 0.93075 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.98 11.89 21.66 0.26 -45.72 16 2 C 0.00 -0.07 5.50 84.96 0.47 0.39 16 3 Si 1.03 37.19 29.55 68.60 2.03 39.22 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 5 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 6 H -0.24 -8.02 7.11 99.48 0.71 -7.32 16 7 C -0.35 -18.38 10.31 83.98 0.87 -17.51 16 8 H 0.14 6.58 7.83 -2.91 -0.02 6.56 16 9 N -0.16 -9.28 3.78 -190.21 -0.72 -10.00 16 10 C -0.12 -6.12 11.45 83.18 0.95 -5.17 16 11 C -0.09 -4.30 5.71 41.55 0.24 -4.07 16 12 C 0.20 7.18 2.90 44.17 0.13 7.31 16 13 H 0.10 3.28 8.10 -2.38 -0.02 3.26 16 14 N -0.81 -24.85 8.85 -171.80 -1.52 -26.37 16 15 C 0.09 3.16 2.93 31.09 0.09 3.25 16 16 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 17 C -0.13 -3.11 6.28 31.61 0.20 -2.91 16 18 C -0.15 -3.04 7.09 31.61 0.22 -2.81 16 19 C 0.03 0.86 7.63 72.49 0.55 1.41 16 20 O -0.40 -15.24 11.12 -148.98 -1.66 -16.90 16 21 N -0.35 -19.47 12.29 -49.00 -0.60 -20.07 16 22 N -0.15 -9.47 11.73 37.02 0.43 -9.03 16 23 H 0.29 14.70 8.31 -92.71 -0.77 13.93 16 24 H 0.18 7.49 8.06 -2.91 -0.02 7.47 16 25 H 0.34 11.11 8.99 -89.69 -0.81 10.30 16 26 H 0.35 10.04 9.06 -89.70 -0.81 9.22 16 27 H 0.08 1.99 7.87 -2.39 -0.02 1.97 16 28 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -71.88 277.40 1.47 -70.41 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: -0.47 Total: 38.57 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 3.72 Total: -20.11 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -2.15 Total: -111.19 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -1.66 Total: -16.90 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -71.88 1.47 -70.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330751052.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.443 kcal (2) G-P(sol) polarization free energy of solvation -71.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds