Wall clock time and date at job start Sun Mar 29 2020 22:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47202 * 2 1 4 4 C 1.50697 * 109.46773 * 239.99688 * 2 1 3 5 5 H 1.08007 * 119.99725 * 275.10455 * 4 2 1 6 6 C 1.37876 * 119.99959 * 95.10729 * 4 2 1 7 7 N 1.31518 * 119.99393 * 184.90865 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 4.90750 * 6 4 2 9 9 H 1.48500 * 109.47090 * 84.82465 * 8 6 4 10 10 H 1.48508 * 109.46957 * 204.81924 * 8 6 4 11 11 H 1.48492 * 109.47124 * 324.81939 * 8 6 4 12 12 C 1.50699 * 109.46987 * 119.99923 * 2 1 3 13 13 O 1.21282 * 120.00365 * 119.99795 * 12 2 1 14 14 N 1.34777 * 119.99865 * 299.72340 * 12 2 1 15 15 C 1.46504 * 120.00167 * 180.27952 * 14 12 2 16 16 C 1.50697 * 109.47239 * 179.97438 * 15 14 12 17 17 N 1.33248 * 125.52538 * 90.02384 * 16 15 14 18 18 C 1.30828 * 109.82948 * 179.97438 * 17 16 15 19 19 N 1.34429 * 108.07364 * 359.97438 * 18 17 16 20 20 C 1.46503 * 126.81973 * 179.97438 * 19 18 17 21 21 N 1.30711 * 125.52666 * 269.71386 * 16 15 14 22 22 H 1.08991 * 109.47187 * 175.08009 * 1 2 3 23 23 H 1.09007 * 109.46738 * 295.08024 * 1 2 3 24 24 H 1.08994 * 109.46908 * 55.07102 * 1 2 3 25 25 H 0.97006 * 119.99102 * 180.02562 * 7 6 4 26 26 H 0.96999 * 120.00051 * 0.27376 * 14 12 2 27 27 H 1.09008 * 109.46659 * 299.99728 * 15 14 12 28 28 H 1.09001 * 109.47385 * 59.99092 * 15 14 12 29 29 H 1.07996 * 125.96540 * 180.02562 * 18 17 16 30 30 H 1.09005 * 109.47682 * 90.00147 * 20 19 18 31 31 H 1.09002 * 109.47235 * 210.00326 * 20 19 18 32 32 H 1.09003 * 109.47396 * 330.00220 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1338 -1.7858 -1.2294 6 6 2.3623 0.0122 -2.3573 7 7 2.7080 -0.6131 -3.4615 8 14 2.3182 1.8791 -2.3157 9 1 3.6039 2.3928 -1.7788 10 1 2.1127 2.4002 -3.6911 11 1 1.2030 2.3286 -1.4444 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7113 -0.2466 2.4545 15 6 2.2047 -0.9336 3.6508 16 6 1.7073 -0.2197 4.8812 17 7 0.5667 -0.4793 5.5191 18 6 0.4402 0.3215 6.5458 19 7 1.5185 1.1233 6.5848 20 6 1.7962 2.1742 7.5670 21 7 2.3277 0.7509 5.4990 22 1 -0.3633 -1.0238 -0.0881 23 1 -0.3633 0.4356 0.9308 24 1 -0.3633 0.5884 -0.8425 25 1 2.9405 -0.1046 -4.2542 26 1 1.1537 0.5420 2.5435 27 1 1.8417 -1.9615 3.6551 28 1 3.2947 -0.9333 3.6465 29 1 -0.3859 0.3355 7.2413 30 1 2.3518 1.7515 8.4042 31 1 2.3872 2.9616 7.0993 32 1 0.8563 2.5914 7.9284 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334375249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:33 Heat of formation + Delta-G solvation = 24.790457 kcal Electronic energy + Delta-G solvation = -16383.432254 eV Core-core repulsion = 13573.057126 eV Total energy + Delta-G solvation = -2810.375128 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.15053 -40.59677 -36.31298 -35.63251 -34.65410 -33.33457 -32.32509 -29.40462 -27.25288 -26.93639 -24.13175 -23.03197 -21.78638 -21.04429 -19.13019 -18.28473 -17.46970 -17.30622 -16.64514 -16.43850 -15.98975 -15.79662 -14.97235 -14.48927 -14.44571 -14.17662 -13.93267 -13.72688 -13.65975 -13.08763 -12.93467 -12.72019 -12.59044 -12.13755 -11.74797 -11.25785 -11.10835 -10.94291 -10.78665 -10.72947 -10.34556 -10.10514 -8.25988 -6.32406 0.50745 1.36386 1.39042 1.40715 1.49642 1.64111 1.86157 2.36553 2.52023 3.04291 3.11867 3.47339 3.96304 4.16277 4.23999 4.41059 4.45533 4.53321 4.67785 4.73108 4.74190 4.85063 5.12841 5.13677 5.23941 5.40684 5.49829 5.58388 5.91713 6.25967 6.61258 6.81696 7.02576 7.28308 7.45072 8.92004 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039495 B = 0.005228 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.786835 B = 5354.498725 C = 5625.290259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.007 4.007 3 H 0.071 0.929 4 C -0.507 4.507 5 H 0.025 0.975 6 C 0.008 3.992 7 N -0.950 5.950 8 Si 0.946 3.054 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.225 1.225 12 C 0.524 3.476 13 O -0.578 6.578 14 N -0.718 5.718 15 C 0.219 3.781 16 C 0.203 3.797 17 N -0.568 5.568 18 C 0.266 3.734 19 N -0.381 5.381 20 C 0.087 3.913 21 N -0.331 5.331 22 H 0.040 0.960 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.267 0.733 26 H 0.409 0.591 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.274 0.726 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.338 11.204 25.811 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.028 4.028 3 H 0.089 0.911 4 C -0.545 4.545 5 H 0.043 0.957 6 C -0.189 4.189 7 N -0.590 5.590 8 Si 0.768 3.232 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.148 1.148 12 C 0.312 3.688 13 O -0.456 6.456 14 N -0.373 5.373 15 C 0.093 3.907 16 C -0.080 4.080 17 N -0.296 5.296 18 C -0.030 4.030 19 N -0.172 5.172 20 C -0.053 4.053 21 N -0.162 5.162 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.244 0.756 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.289 0.711 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.307 10.629 25.342 28.195 hybrid contribution 0.146 0.572 -0.295 0.660 sum -6.161 11.202 25.047 28.121 Atomic orbital electron populations 1.21821 0.93741 1.01311 1.01524 1.19329 0.96332 0.96915 0.90254 0.91094 1.20876 1.43541 0.93937 0.96181 0.95658 1.26050 0.93926 1.04526 0.94390 1.70076 1.47821 1.38348 1.02775 0.85776 0.80470 0.78632 0.78365 1.19534 1.20867 1.14810 1.21542 0.78496 0.83926 0.84822 1.90575 1.39340 1.28466 1.87194 1.45909 1.54634 1.32613 1.04162 1.19181 0.98706 0.94892 0.77930 1.23789 0.91137 0.94943 0.98137 1.70392 1.20180 1.29143 1.09908 1.27050 0.93158 0.86511 0.96238 1.50762 1.15384 1.29282 1.21738 1.22424 1.06156 0.87793 0.88930 1.78004 1.18982 1.17762 1.01429 0.94116 0.91205 0.92213 0.92364 0.75551 0.89787 0.90334 0.71073 0.88687 0.89362 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.12 71.98 0.66 -4.31 16 2 C -0.01 -0.31 2.30 -12.29 -0.03 -0.34 16 3 H 0.07 3.12 5.29 -2.39 -0.01 3.11 16 4 C -0.51 -30.82 8.36 25.60 0.21 -30.61 16 5 H 0.03 1.79 7.61 -2.91 -0.02 1.77 16 6 C 0.01 0.46 5.47 84.65 0.46 0.92 16 7 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 8 Si 0.95 43.33 26.99 68.60 1.85 45.18 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.23 -8.86 6.82 99.48 0.68 -8.18 16 12 C 0.52 24.32 7.15 87.66 0.63 24.94 16 13 O -0.58 -32.37 15.77 -3.04 -0.05 -32.41 16 14 N -0.72 -25.54 5.41 -466.77 -2.53 -28.07 16 15 C 0.22 7.22 6.30 85.63 0.54 7.76 16 16 C 0.20 5.76 7.51 138.63 1.04 6.80 16 17 N -0.57 -14.16 11.19 -191.81 -2.15 -16.31 16 18 C 0.27 3.88 12.66 180.36 2.28 6.16 16 19 N -0.38 -6.11 4.04 -373.60 -1.51 -7.62 16 20 C 0.09 0.42 11.53 127.77 1.47 1.89 16 21 N -0.33 -8.72 12.70 -51.33 -0.65 -9.37 16 22 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.07 2.14 7.44 -2.38 -0.02 2.12 16 24 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.27 16.04 8.31 -92.70 -0.77 15.27 16 26 H 0.41 12.36 7.83 -92.71 -0.73 11.63 16 27 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 28 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.27 0.50 8.06 -2.91 -0.02 0.48 16 30 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.13 -0.39 8.14 -2.39 -0.02 -0.41 16 Total: -1.00 -87.08 283.01 2.92 -84.16 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.38 Total: 12.55 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 7.27 Total: 13.22 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -6.53 Total: -122.71 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.05 Total: -32.41 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.85 Total: 45.18 kcal Total: -87.08 2.92 -84.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334375249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.953 kcal (2) G-P(sol) polarization free energy of solvation -87.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds