Wall clock time and date at job start Sun Mar 29 2020 22:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36945 * 119.99982 * 2 1 4 4 H 1.07997 * 119.99756 * 321.69079 * 3 2 1 5 5 C 1.38803 * 120.00148 * 141.68966 * 3 2 1 6 6 N 1.31620 * 120.00101 * 157.54733 * 5 3 2 7 7 Si 1.86806 * 119.99949 * 337.54719 * 5 3 2 8 8 H 1.48491 * 109.47140 * 95.64984 * 7 5 3 9 9 H 1.48506 * 109.46974 * 215.64992 * 7 5 3 10 10 H 1.48498 * 109.47050 * 335.64579 * 7 5 3 11 11 C 1.46496 * 120.00216 * 180.02562 * 2 1 3 12 12 N 1.46498 * 109.47201 * 90.00029 * 11 2 1 13 13 C 1.34244 * 122.92175 * 90.00471 * 12 11 2 14 14 O 1.21219 * 125.80527 * 352.01975 * 13 12 11 15 15 C 1.51527 * 108.39215 * 172.04761 * 13 12 11 16 16 H 1.09002 * 115.33405 * 250.81365 * 15 13 12 17 17 C 1.53383 * 114.19326 * 112.20118 * 15 13 12 18 18 C 1.53579 * 87.80185 * 281.51416 * 17 15 13 19 19 C 1.55292 * 102.05269 * 18.92198 * 15 13 12 20 20 H 1.09001 * 117.77332 * 209.64794 * 19 15 13 21 21 C 1.34215 * 122.92414 * 269.70292 * 12 11 2 22 22 O 1.21228 * 125.84238 * 352.51910 * 21 12 11 23 23 H 1.08998 * 109.47427 * 264.85860 * 1 2 3 24 24 H 1.09007 * 109.47565 * 24.86041 * 1 2 3 25 25 H 1.09000 * 109.47102 * 144.85774 * 1 2 3 26 26 H 0.97007 * 119.99901 * 179.97438 * 6 5 3 27 27 H 1.08999 * 109.47237 * 329.99600 * 11 2 1 28 28 H 1.08996 * 109.47053 * 210.00030 * 11 2 1 29 29 H 1.09002 * 113.50153 * 36.24828 * 17 15 13 30 30 H 1.09005 * 113.49987 * 166.72272 * 17 15 13 31 31 H 1.09000 * 113.49495 * 90.95853 * 18 17 15 32 32 H 1.09002 * 113.50227 * 221.48994 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 1.7840 2.0205 -0.5798 5 6 3.3135 1.3154 0.7452 6 7 4.1972 2.2386 0.4304 7 14 3.6256 0.1794 2.1949 8 1 4.4701 -0.9609 1.7573 9 1 4.3243 0.9290 3.2697 10 1 2.3304 -0.3328 2.7102 11 6 2.1974 -1.2687 -0.0006 12 7 2.4416 -1.6910 -1.3819 13 6 3.5392 -1.3379 -2.0696 14 8 4.3766 -0.5398 -1.7076 15 6 3.5528 -2.1061 -3.3756 16 1 4.3119 -2.8847 -3.4509 17 6 3.3483 -1.2335 -4.6204 18 6 1.8481 -1.2198 -4.2918 19 6 2.0698 -2.5476 -3.5076 20 1 1.8618 -3.4775 -4.0369 21 6 1.5904 -2.4693 -2.0681 22 8 0.6074 -3.0165 -1.6165 23 1 -0.3634 -0.0921 1.0235 24 1 -0.3634 0.9325 -0.4321 25 1 -0.3633 -0.8403 -0.5915 26 1 5.0105 2.3293 0.9514 27 1 1.6084 -2.0285 0.5130 28 1 3.1498 -1.1385 0.5133 29 1 3.8185 -0.2529 -4.5458 30 1 3.5852 -1.7449 -5.5534 31 1 1.5498 -0.3851 -3.6576 32 1 1.2102 -1.3337 -5.1683 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349917439.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:42 Heat of formation + Delta-G solvation = -23.047324 kcal Electronic energy + Delta-G solvation = -18068.249482 eV Core-core repulsion = 15223.507201 eV Total energy + Delta-G solvation = -2844.742281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.31042 -39.44222 -38.61389 -37.57892 -35.61745 -33.72989 -29.56465 -28.15352 -27.74222 -26.38857 -24.28862 -23.32832 -21.24137 -20.49955 -19.18736 -18.10498 -17.79418 -17.20412 -16.94080 -16.15812 -16.11126 -15.49229 -15.03306 -14.92163 -14.88377 -14.71045 -14.15036 -14.00433 -13.39831 -13.12391 -12.81094 -12.65102 -12.58998 -12.27861 -12.13321 -11.85488 -11.55690 -11.07296 -10.90069 -10.77278 -10.64426 -9.11764 -8.28695 -5.74067 0.62285 1.17671 1.28245 1.37703 1.59108 1.88037 2.31346 2.88593 2.98232 3.25372 3.32114 3.38649 3.55882 3.75644 3.97579 4.18338 4.33341 4.49002 4.53893 4.62960 4.71587 4.84357 4.89186 4.93901 4.95595 5.04918 5.32910 5.78512 5.97466 6.09918 6.49241 6.74150 6.94968 7.43662 7.82871 8.89876 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.027613 B = 0.011454 C = 0.009886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.779508 B = 2444.027840 C = 2831.477306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.606 5.606 3 C -0.280 4.280 4 H 0.040 0.960 5 C 0.015 3.985 6 N -0.922 5.922 7 Si 0.920 3.080 8 H -0.281 1.281 9 H -0.293 1.293 10 H -0.250 1.250 11 C 0.326 3.674 12 N -0.590 5.590 13 C 0.515 3.485 14 O -0.498 6.498 15 C -0.143 4.143 16 H 0.165 0.835 17 C -0.099 4.099 18 C -0.121 4.121 19 C -0.125 4.125 20 H 0.187 0.813 21 C 0.526 3.474 22 O -0.521 6.521 23 H 0.031 0.969 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.264 0.736 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.148 0.852 31 H 0.046 0.954 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 -12.770 -10.653 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.330 5.330 3 C -0.409 4.409 4 H 0.057 0.943 5 C -0.185 4.185 6 N -0.562 5.562 7 Si 0.747 3.253 8 H -0.209 1.209 9 H -0.221 1.221 10 H -0.174 1.174 11 C 0.119 3.881 12 N -0.337 5.337 13 C 0.304 3.696 14 O -0.369 6.369 15 C -0.164 4.164 16 H 0.183 0.817 17 C -0.137 4.137 18 C -0.159 4.159 19 C -0.146 4.146 20 H 0.205 0.795 21 C 0.317 3.683 22 O -0.396 6.396 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.166 0.834 31 H 0.065 0.935 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.154 -12.466 -10.068 16.331 hybrid contribution 0.464 0.268 1.352 1.454 sum -2.690 -12.198 -8.716 15.232 Atomic orbital electron populations 1.21259 0.81635 1.00137 0.99198 1.44613 1.02779 1.01576 1.84041 1.18421 1.07243 0.90823 1.24447 0.94271 1.25863 0.95914 0.97487 0.99278 1.69964 1.08884 1.37630 1.39756 0.86209 0.78732 0.79018 0.81320 1.20897 1.22055 1.17412 1.21768 0.96811 0.87771 0.81777 1.48680 1.22238 1.45516 1.17297 1.21559 0.80097 0.80519 0.87455 1.90848 1.40876 1.31784 1.73399 1.23656 0.99592 1.00672 0.92448 0.81730 1.22673 0.94523 0.99727 0.96749 1.23150 0.99039 0.93222 1.00473 1.24559 0.94527 1.04028 0.91483 0.79531 1.21696 0.81122 0.75028 0.90462 1.90652 1.26263 1.45834 1.76869 0.95112 0.93365 0.93544 0.92719 0.88872 0.92051 0.92421 0.83448 0.93518 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.08 10.70 127.77 1.37 6.45 16 2 N -0.61 -30.18 2.70 -738.81 -2.00 -32.17 16 3 C -0.28 -16.48 9.88 84.03 0.83 -15.65 16 4 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 5 C 0.01 0.88 5.30 84.86 0.45 1.33 16 6 N -0.92 -59.27 13.97 21.65 0.30 -58.97 16 7 Si 0.92 47.05 25.08 68.60 1.72 48.77 16 8 H -0.28 -14.17 6.68 99.48 0.66 -13.50 16 9 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 10 H -0.25 -11.99 7.11 99.48 0.71 -11.29 16 11 C 0.33 14.95 4.99 170.96 0.85 15.80 16 12 N -0.59 -23.63 2.81 -765.63 -2.15 -25.78 16 13 C 0.51 20.48 7.05 88.00 0.62 21.10 16 14 O -0.50 -25.55 17.61 -2.84 -0.05 -25.60 16 15 C -0.14 -3.41 5.13 -10.36 -0.05 -3.46 16 16 H 0.17 2.73 8.14 -2.39 -0.02 2.71 16 17 C -0.10 -1.95 7.68 30.92 0.24 -1.71 16 18 C -0.12 -2.65 7.34 31.75 0.23 -2.42 16 19 C -0.13 -2.68 5.31 -9.40 -0.05 -2.73 16 20 H 0.19 2.28 8.14 -2.39 -0.02 2.26 16 21 C 0.53 17.52 7.52 88.14 0.66 18.18 16 22 O -0.52 -19.46 16.97 -2.87 -0.05 -19.50 16 23 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.98 8.00 -2.38 -0.02 1.96 16 25 H 0.05 1.81 7.58 -2.39 -0.02 1.79 16 26 H 0.26 16.15 8.31 -92.70 -0.77 15.37 16 27 H 0.09 3.88 7.73 -2.39 -0.02 3.86 16 28 H 0.06 3.11 3.19 -2.39 -0.01 3.10 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.15 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.05 1.46 7.87 -2.39 -0.02 1.45 16 32 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -78.37 270.52 4.01 -74.36 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: 1.09 Total: 2.01 kcal Atomic # 6 Polarization: 31.74 SS G_CDS: 5.15 Total: 36.89 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -3.85 Total: -116.92 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.10 Total: -45.11 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.72 Total: 48.77 kcal Total: -78.37 4.01 -74.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349917439.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.317 kcal (2) G-P(sol) polarization free energy of solvation -78.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds