Wall clock time and date at job start Sun Mar 29 2020 22:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95694 * 2 1 4 4 C 1.33241 * 109.82716 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47179 * 89.99957 * 5 4 3 7 7 O 1.21287 * 120.00120 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00242 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99992 * 0.02562 * 8 6 5 10 10 C 1.46505 * 120.00240 * 179.97438 * 8 6 5 11 11 C 1.50700 * 109.46780 * 90.00619 * 10 8 6 12 12 H 1.07992 * 120.00469 * 359.97438 * 11 10 8 13 13 C 1.37883 * 119.99413 * 180.02562 * 11 10 8 14 14 N 1.31505 * 120.00186 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99554 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47078 * 89.99896 * 15 13 11 17 17 H 1.48498 * 109.46868 * 209.99948 * 15 13 11 18 18 H 1.48503 * 109.47127 * 329.99919 * 15 13 11 19 19 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 20 20 N 1.34428 * 125.96273 * 180.02562 * 2 1 3 21 21 H 0.96998 * 126.82131 * 359.97438 * 20 2 1 22 22 H 1.09003 * 109.47179 * 89.97785 * 1 2 3 23 23 H 1.09004 * 109.47263 * 209.97548 * 1 2 3 24 24 H 1.09001 * 109.47979 * 329.97713 * 1 2 3 25 25 H 1.08999 * 109.46976 * 209.99632 * 5 4 3 26 26 H 1.08988 * 109.47287 * 330.00039 * 5 4 3 27 27 H 1.09000 * 109.47547 * 89.99400 * 9 8 6 28 28 H 1.09005 * 109.47034 * 209.99735 * 9 8 6 29 29 H 1.09002 * 109.46825 * 329.98988 * 9 8 6 30 30 H 1.08995 * 109.46977 * 210.00401 * 10 8 6 31 31 H 1.09005 * 109.47175 * 330.00304 * 10 8 6 32 32 H 0.97006 * 119.99993 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6889 -0.0006 5 6 4.7371 1.6238 -0.0013 6 6 5.1318 1.9357 1.4193 7 8 4.5144 1.4465 2.3416 8 7 6.1714 2.7573 1.6650 9 6 6.9176 3.3477 0.5510 10 6 6.5548 3.0610 3.0460 11 6 7.5672 2.0503 3.5200 12 1 7.8922 1.2606 2.8589 13 6 8.0777 2.1334 4.7981 14 7 7.6815 3.0947 5.6033 15 14 9.3321 0.8802 5.3859 16 1 10.7005 1.3661 5.0748 17 1 9.1949 0.6930 6.8527 18 1 9.0982 -0.4147 4.6976 19 7 3.6194 -0.6167 -0.0004 20 7 2.2964 -1.0881 -0.0005 21 1 2.0093 -2.0146 -0.0006 22 1 -0.3634 0.0004 -1.0277 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3635 0.8897 0.5142 25 1 5.5739 1.1510 -0.5154 26 1 4.4697 2.5470 -0.5151 27 1 6.4654 4.3003 0.2751 28 1 7.9523 3.5105 0.8526 29 1 6.8903 2.6715 -0.3034 30 1 6.9895 4.0594 3.0912 31 1 5.6729 3.0194 3.6854 32 1 8.0410 3.1533 6.5024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350606700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:29 Heat of formation + Delta-G solvation = 17.978230 kcal Electronic energy + Delta-G solvation = -16554.326549 eV Core-core repulsion = 13743.656020 eV Total energy + Delta-G solvation = -2810.670528 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.15924 -40.54915 -36.61668 -34.89287 -34.50681 -33.35415 -31.35178 -29.48086 -28.53417 -27.22534 -25.00349 -22.60919 -21.73943 -19.99232 -18.87902 -18.68963 -17.99790 -17.14715 -16.49720 -16.42354 -16.16331 -15.25649 -14.58412 -14.43747 -14.31071 -13.79455 -13.61226 -13.59428 -13.43694 -13.11274 -13.06844 -12.79187 -12.72022 -12.50154 -12.21479 -11.71288 -11.21864 -11.10420 -10.75085 -10.64599 -10.39519 -9.42482 -8.22931 -6.37717 0.57479 1.35066 1.38507 1.48751 1.68285 1.75464 1.80991 2.34773 2.52649 3.03494 3.06422 3.55153 3.79131 3.93269 4.32439 4.40638 4.52560 4.71883 4.74808 4.79727 4.98728 5.01928 5.06581 5.22249 5.26669 5.34774 5.55865 5.83767 6.05923 6.23414 6.68484 6.76008 7.07653 7.26978 7.45050 8.84295 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.033161 B = 0.005598 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.155290 B = 5000.208539 C = 5293.890366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.284 3.716 3 N -0.569 5.569 4 C 0.239 3.761 5 C -0.037 4.037 6 C 0.504 3.496 7 O -0.596 6.596 8 N -0.607 5.607 9 C 0.073 3.927 10 C 0.260 3.740 11 C -0.543 4.543 12 H 0.052 0.948 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.968 3.032 16 H -0.259 1.259 17 H -0.280 1.280 18 H -0.276 1.276 19 N -0.341 5.341 20 N -0.476 5.476 21 H 0.455 0.545 22 H 0.119 0.881 23 H 0.110 0.890 24 H 0.095 0.905 25 H 0.139 0.861 26 H 0.148 0.852 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.029 0.971 31 H -0.006 1.006 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.615 -4.998 -16.300 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.006 3.994 3 N -0.300 5.300 4 C -0.045 4.045 5 C -0.079 4.079 6 C 0.292 3.708 7 O -0.478 6.478 8 N -0.339 5.339 9 C -0.068 4.068 10 C 0.138 3.862 11 C -0.582 4.582 12 H 0.071 0.929 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.793 3.207 16 H -0.184 1.184 17 H -0.206 1.206 18 H -0.201 1.201 19 N -0.171 5.171 20 N -0.196 5.196 21 H 0.303 0.697 22 H 0.137 0.863 23 H 0.129 0.871 24 H 0.114 0.886 25 H 0.157 0.843 26 H 0.166 0.834 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.047 0.953 31 H 0.012 0.988 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.309 -5.180 -15.664 19.454 hybrid contribution 0.404 -1.043 0.962 1.475 sum -9.905 -6.223 -14.703 18.788 Atomic orbital electron populations 1.20651 0.79694 1.06301 1.06402 1.25335 0.98444 0.81939 0.93667 1.70270 1.01544 1.31484 1.26669 1.23646 0.93469 0.90081 0.97258 1.20025 0.93880 0.99826 0.94143 1.20838 0.80033 0.78588 0.91367 1.90649 1.55362 1.53317 1.48447 1.48124 1.30541 1.46282 1.08927 1.22045 0.96999 0.99380 0.88400 1.18766 0.93758 0.95507 0.78138 1.21714 1.24176 1.13187 0.99129 0.92933 1.25869 0.99018 0.97845 0.96446 1.70053 1.44836 1.33880 1.08083 0.85407 0.79276 0.78742 0.77318 1.18413 1.20578 1.20093 1.77862 0.98993 1.12618 1.27631 1.47826 1.03164 1.10984 1.57621 0.69660 0.86323 0.87116 0.88611 0.84293 0.83414 0.90572 0.91239 0.88397 0.95337 0.98775 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.51 71.23 0.75 -0.11 16 2 C 0.28 7.10 8.24 138.22 1.14 8.24 16 3 N -0.57 -19.22 11.19 -179.73 -2.01 -21.24 16 4 C 0.24 8.58 6.63 138.63 0.92 9.50 16 5 C -0.04 -1.19 4.88 29.10 0.14 -1.04 16 6 C 0.50 22.76 7.67 87.66 0.67 23.44 16 7 O -0.60 -34.02 15.61 -3.05 -0.05 -34.07 16 8 N -0.61 -26.91 2.86 -851.12 -2.43 -29.34 16 9 C 0.07 2.18 10.24 127.77 1.31 3.49 16 10 C 0.26 14.60 5.16 85.63 0.44 15.04 16 11 C -0.54 -32.49 9.39 25.60 0.24 -32.25 16 12 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 13 C 0.01 0.42 5.46 84.66 0.46 0.88 16 14 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 15 Si 0.97 46.22 29.54 68.60 2.03 48.25 16 16 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 19 N -0.34 -12.02 12.80 -51.33 -0.66 -12.68 16 20 N -0.48 -12.06 7.45 -50.71 -0.38 -12.43 16 21 H 0.45 7.34 8.96 -213.10 -1.91 5.43 16 22 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.14 3.60 7.40 -2.39 -0.02 3.58 16 26 H 0.15 3.66 8.11 -2.39 -0.02 3.64 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 2.16 8.07 -2.38 -0.02 2.14 16 29 H 0.10 2.13 6.44 -2.39 -0.02 2.11 16 30 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 31 H -0.01 -0.38 7.42 -2.38 -0.02 -0.40 16 32 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -88.90 285.39 2.09 -86.81 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -0.77 Total: 4.86 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 6.07 Total: 27.19 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -5.19 Total: -133.04 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.05 Total: -34.07 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -88.90 2.09 -86.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350606700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.791 kcal (2) G-P(sol) polarization free energy of solvation -88.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds