Wall clock time and date at job start Sun Mar 29 2020 22:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99786 * 2 1 4 4 H 1.48498 * 109.47485 * 269.99870 * 3 2 1 5 5 H 1.48500 * 109.47454 * 30.00013 * 3 2 1 6 6 H 1.48505 * 109.47014 * 150.00208 * 3 2 1 7 7 C 1.37873 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99718 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00217 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47077 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46833 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47025 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00300 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99657 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00264 * 180.02562 * 13 12 11 16 16 C 1.50697 * 109.47235 * 179.97438 * 15 13 12 17 17 N 1.33245 * 125.52410 * 269.69245 * 16 15 13 18 18 C 1.30832 * 109.82704 * 180.26051 * 17 16 15 19 19 N 1.34437 * 108.07767 * 0.02562 * 18 17 16 20 20 H 0.97001 * 126.82137 * 180.02562 * 19 18 17 21 21 N 1.30714 * 125.52919 * 90.00111 * 16 15 13 22 22 H 0.97001 * 119.99962 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47060 * 60.00518 * 9 7 2 24 24 H 1.08998 * 109.46913 * 300.00499 * 9 7 2 25 25 H 1.08999 * 109.47571 * 59.99940 * 10 9 7 26 26 H 1.08998 * 109.47278 * 299.99812 * 10 9 7 27 27 H 1.09005 * 109.46633 * 60.00648 * 11 10 9 28 28 H 1.08989 * 109.47746 * 299.99841 * 11 10 9 29 29 H 0.97008 * 119.99870 * 0.02562 * 12 11 10 30 30 H 1.09008 * 109.47075 * 59.99854 * 15 13 12 31 31 H 1.08994 * 109.47339 * 300.00344 * 15 13 12 32 32 H 1.07998 * 125.96253 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 -0.0012 12 7 6.0399 -4.0177 -0.0004 13 6 7.3650 -4.2641 -0.0008 14 8 8.1531 -3.3422 -0.0012 15 6 7.8673 -5.6848 -0.0006 16 6 9.3742 -5.6849 -0.0017 17 7 10.1477 -5.6911 -1.0867 18 6 11.4074 -5.6947 -0.7336 19 7 11.4642 -5.6913 0.6096 20 1 12.2646 -5.6924 1.1576 21 7 10.1346 -5.6845 1.0615 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6797 0.8895 24 1 3.8745 -0.6807 -0.8905 25 1 3.6578 -3.1506 -0.8896 26 1 3.6585 -3.1502 0.8903 27 1 5.9155 -2.1224 0.8885 28 1 5.9142 -2.1231 -0.8915 29 1 5.4095 -4.7551 0.0003 30 1 7.5036 -6.1989 -0.8904 31 1 7.5042 -6.1985 0.8895 32 1 12.2540 -5.7003 -1.4042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351756120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:36 Heat of formation + Delta-G solvation = 34.317615 kcal Electronic energy + Delta-G solvation = -15758.319168 eV Core-core repulsion = 12948.357169 eV Total energy + Delta-G solvation = -2809.962000 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.32202 -39.44765 -35.54088 -33.53264 -33.27062 -31.95555 -31.42816 -29.36229 -26.89566 -23.26304 -22.83924 -21.20302 -20.59399 -19.69328 -18.57987 -17.14946 -16.71436 -15.90178 -15.65214 -15.32915 -15.11214 -14.22090 -14.10351 -13.55164 -13.38523 -12.68139 -12.50063 -12.32691 -11.92977 -11.80522 -11.06266 -10.87693 -10.41827 -10.28174 -10.19364 -10.02329 -9.92378 -9.75486 -9.49706 -9.21255 -8.84771 -8.54286 -6.05199 -4.03808 1.37693 2.40258 2.59114 2.72700 3.32570 3.39811 3.42113 3.44665 3.88214 4.38449 4.45744 4.65800 4.90517 5.16300 5.28292 5.29125 5.58811 5.68595 5.95520 6.04094 6.13345 6.36946 6.47016 6.71625 6.76731 6.81170 7.24676 7.38062 7.62688 7.77960 7.83808 8.32797 8.51651 8.98812 9.57227 11.08075 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.065006 B = 0.003576 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.626651 B = 7827.134875 C = 8069.612068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.724 5.724 13 C 0.517 3.483 14 O -0.537 6.537 15 C -0.051 4.051 16 C 0.252 3.748 17 N -0.534 5.534 18 C 0.262 3.738 19 N -0.485 5.485 20 H 0.441 0.559 21 N -0.305 5.305 22 H 0.263 0.737 23 H 0.018 0.982 24 H 0.014 0.986 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.401 0.599 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.541 -14.076 -0.179 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.151 4.151 11 C -0.008 4.008 12 N -0.376 5.376 13 C 0.301 3.699 14 O -0.413 6.413 15 C -0.094 4.094 16 C -0.032 4.032 17 N -0.262 5.262 18 C -0.038 4.038 19 N -0.203 5.203 20 H 0.286 0.714 21 N -0.134 5.134 22 H 0.073 0.927 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.235 0.765 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 21.502 -13.273 0.187 25.269 hybrid contribution 0.835 0.626 0.172 1.058 sum 22.337 -12.647 0.359 25.671 Atomic orbital electron populations 1.69914 1.06316 1.26949 1.51072 1.25026 0.94745 0.99235 0.94478 0.86777 0.80400 0.83534 0.78596 1.20235 1.21380 1.18912 1.21102 0.89321 0.94519 1.51020 0.90969 1.19506 0.97256 0.91538 0.96662 1.21707 0.90571 1.01024 1.01809 1.21657 0.96125 0.81041 1.01949 1.46077 1.06322 1.10163 1.74993 1.20139 0.82758 0.90355 0.76677 1.90726 1.55345 1.46178 1.49080 1.19929 0.86103 0.96680 1.06650 1.23325 0.96640 0.97429 0.85778 1.70362 1.00679 1.23961 1.31226 1.26069 0.97106 0.96111 0.84486 1.48076 1.07854 1.57255 1.07109 0.71355 1.77981 0.87088 1.25973 1.22343 0.92703 0.96324 0.96741 0.92017 0.92024 0.91827 0.91757 0.76457 0.85914 0.86404 0.76107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.27 4.04 -27.89 -0.11 -0.39 16 10 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 11 C 0.12 1.92 5.68 -4.04 -0.02 1.90 16 12 N -0.72 -9.77 5.56 -60.29 -0.33 -10.11 16 13 C 0.52 7.56 7.82 -10.99 -0.09 7.47 16 14 O -0.54 -10.35 16.03 5.55 0.09 -10.26 16 15 C -0.05 -0.55 6.33 -29.04 -0.18 -0.73 16 16 C 0.25 3.28 6.63 -156.85 -1.04 2.24 16 17 N -0.53 -6.68 11.19 -11.97 -0.13 -6.81 16 18 C 0.26 2.15 13.13 -90.65 -1.19 0.96 16 19 N -0.48 -4.11 7.45 29.53 0.22 -3.89 16 20 H 0.44 1.91 8.96 -182.34 -1.63 0.28 16 21 N -0.30 -3.90 12.80 32.42 0.41 -3.49 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 24 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.13 8.14 -51.94 -0.42 0.71 16 29 H 0.40 4.09 8.47 -40.82 -0.35 3.75 16 30 H 0.12 1.01 8.14 -51.92 -0.42 0.58 16 31 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.22 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 284.64 15.07 4.29 4.29 Total: -1.00 -38.25 284.64 -7.85 -46.10 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.29 Total: -1.93 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.21 Total: -4.02 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.94 Total: -51.40 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -38.25 -7.85 -46.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351756120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.413 kcal (2) G-P(sol) polarization free energy of solvation -38.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds