Wall clock time and date at job start Sun Mar 29 2020 21:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21303 * 119.99966 * 2 1 4 4 C 1.46772 * 120.00027 * 180.02562 * 2 1 3 5 5 N 1.32194 * 126.50213 * 0.18596 * 4 2 1 6 6 N 1.28453 * 110.16710 * 180.28413 * 5 4 2 7 7 C 1.46505 * 124.88128 * 179.69491 * 6 5 4 8 8 C 1.35866 * 110.23235 * 359.71272 * 6 5 4 9 9 C 1.35727 * 107.15135 * 0.02562 * 8 6 5 10 10 O 1.36052 * 127.27616 * 179.97438 * 9 8 6 11 11 C 1.42895 * 116.99889 * 0.03078 * 10 9 8 12 12 C 1.53006 * 109.47036 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47454 * 59.99696 * 17 15 13 19 19 H 1.48506 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47261 * 299.99689 * 17 15 13 21 21 H 1.09001 * 109.46703 * 269.99654 * 1 2 3 22 22 H 1.09000 * 109.47323 * 29.99851 * 1 2 3 23 23 H 1.09000 * 109.47238 * 150.00293 * 1 2 3 24 24 H 1.08997 * 109.46847 * 270.02775 * 7 6 5 25 25 H 1.08999 * 109.47030 * 30.02292 * 7 6 5 26 26 H 1.08995 * 109.46942 * 150.02096 * 7 6 5 27 27 H 1.08001 * 126.42271 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.47626 * 59.99968 * 11 10 9 29 29 H 1.09001 * 109.47255 * 299.99709 * 11 10 9 30 30 H 1.09001 * 109.47002 * 299.99477 * 12 11 10 31 31 H 1.08993 * 109.46955 * 59.99914 * 12 11 10 32 32 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2408 -1.2711 -0.0006 5 7 1.7138 -2.4834 -0.0046 6 7 2.6430 -3.3703 0.0022 7 6 2.4192 -4.8181 0.0068 8 6 3.8630 -2.7725 0.0048 9 6 3.6519 -1.4318 -0.0001 10 8 4.5931 -0.4494 0.0007 11 6 5.9612 -0.8618 0.0070 12 6 6.8659 0.3722 0.0064 13 6 8.3087 -0.0627 0.0124 14 1 8.5558 -1.1141 0.0166 15 6 9.3134 0.8816 0.0135 16 7 9.0125 2.1619 0.0089 17 14 11.1018 0.3425 0.0216 18 1 11.3783 -0.4740 -1.1876 19 1 11.9799 1.5402 0.0209 20 1 11.3693 -0.4672 1.2374 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 2.3594 -5.1732 1.0356 25 1 1.4863 -5.0432 -0.5100 26 1 3.2453 -5.3150 -0.5018 27 1 4.8212 -3.2708 0.0099 28 1 6.1642 -1.4610 -0.8806 29 1 6.1575 -1.4562 0.8993 30 1 6.6696 0.9662 -0.8862 31 1 6.6630 0.9718 0.8938 32 1 9.7192 2.8262 0.0100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473100516.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:53 Heat of formation + Delta-G solvation = -1.055953 kcal Electronic energy + Delta-G solvation = -16322.830229 eV Core-core repulsion = 13479.041565 eV Total energy + Delta-G solvation = -2843.788664 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.45830 -38.68957 -37.84467 -33.52544 -33.09602 -30.68274 -30.05384 -29.37382 -27.14207 -24.88596 -22.73493 -21.70057 -20.50035 -19.05935 -17.79828 -16.48817 -16.44480 -15.78649 -15.29430 -14.90391 -14.72953 -14.56936 -14.53073 -13.94605 -13.07102 -12.93928 -12.59520 -12.26848 -12.02989 -11.96410 -11.72568 -11.10182 -10.88662 -10.82817 -10.59010 -9.86503 -9.66148 -9.59932 -9.26654 -9.14885 -8.40614 -7.90331 -6.05163 -4.10434 1.36662 2.25382 2.41549 3.30467 3.32331 3.34805 3.36543 3.77755 4.24916 4.43918 4.46802 4.85660 4.96630 5.09288 5.12324 5.30515 5.30995 5.46919 5.50609 5.74252 6.01023 6.07236 6.13967 6.24604 6.70664 6.73956 7.55161 7.67488 7.72358 7.83964 7.99290 8.14496 8.28788 8.95147 9.53278 11.06310 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.030719 B = 0.005261 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.268395 B = 5320.848647 C = 6201.059733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.434 3.566 3 O -0.437 6.437 4 C -0.074 4.074 5 N -0.231 5.231 6 N -0.271 5.271 7 C 0.093 3.907 8 C -0.122 4.122 9 C 0.083 3.917 10 O -0.280 6.280 11 C 0.066 3.934 12 C 0.026 3.974 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.888 5.888 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 H 0.093 0.907 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.183 0.817 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.139 -13.725 -0.007 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.307 3.693 3 O -0.306 6.306 4 C -0.229 4.229 5 N -0.073 5.073 6 N -0.066 5.066 7 C -0.048 4.048 8 C -0.263 4.263 9 C 0.028 3.972 10 O -0.190 6.190 11 C -0.009 4.009 12 C -0.011 4.011 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.526 5.526 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.201 1.201 21 H 0.112 0.888 22 H 0.103 0.897 23 H 0.105 0.895 24 H 0.102 0.898 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.200 0.800 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.710 -13.360 -0.017 20.623 hybrid contribution 2.001 -0.373 0.035 2.036 sum -13.709 -13.733 0.018 19.405 Atomic orbital electron populations 1.22096 0.93174 1.04559 1.04453 1.21186 0.90926 0.85253 0.71888 1.90659 1.72033 1.32523 1.35395 1.22130 0.90518 0.93537 1.16749 1.73513 1.18881 0.96912 1.17982 1.44948 1.03274 1.07049 1.51286 1.22131 1.04793 0.73517 1.04336 1.22618 0.91278 0.92995 1.19385 1.19199 0.90080 0.87722 1.00236 1.86329 1.15933 1.29043 1.87687 1.23340 0.76649 1.01599 0.99280 1.19105 0.91692 0.91252 0.99096 1.20921 0.90175 0.92975 1.52480 0.92503 1.24989 0.99363 0.94830 0.94976 1.69973 1.33114 1.00016 1.49455 0.86558 0.84192 0.78027 0.78615 1.20151 1.21105 1.20147 0.88840 0.89677 0.89524 0.89775 0.88623 0.88633 0.80035 0.93453 0.93455 0.95278 0.95279 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 10.15 36.00 0.37 -1.68 16 2 C 0.43 7.20 7.24 -30.86 -0.22 6.98 16 3 O -0.44 -9.13 17.27 3.08 0.05 -9.07 16 4 C -0.07 -1.27 7.05 -82.82 -0.58 -1.85 16 5 N -0.23 -3.32 11.66 33.37 0.39 -2.93 16 6 N -0.27 -3.38 3.72 -67.81 -0.25 -3.64 16 7 C 0.09 0.59 11.32 59.85 0.68 1.27 16 8 C -0.12 -1.82 10.61 -16.66 -0.18 -1.99 16 9 C 0.08 1.57 7.05 -39.03 -0.28 1.30 16 10 O -0.28 -6.36 9.75 -22.37 -0.22 -6.57 16 11 C 0.07 1.46 5.08 37.16 0.19 1.65 16 12 C 0.03 0.70 5.34 -27.88 -0.15 0.56 16 13 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 14 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 17 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.09 0.83 7.92 -51.93 -0.41 0.42 16 24 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.10 0.42 8.13 -51.93 -0.42 0.00 16 27 H 0.18 2.27 7.73 -52.49 -0.41 1.87 16 28 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 29 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 289.87 15.07 4.37 4.37 Total: -1.00 -35.37 289.87 -4.69 -40.06 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -4.16 Total: -4.93 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -0.59 Total: -7.41 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.87 Total: -32.91 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.16 Total: -15.65 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.37 -4.69 -40.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473100516.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.003 kcal (2) G-P(sol) polarization free energy of solvation -35.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds