Wall clock time and date at job start Sun Mar 29 2020 21:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47038 * 2 1 4 4 C 1.36939 * 119.99985 * 275.33996 * 3 2 1 5 5 H 1.08005 * 119.99786 * 34.11305 * 4 3 2 6 6 C 1.38809 * 119.99901 * 214.11056 * 4 3 2 7 7 N 1.31616 * 120.00094 * 23.39525 * 6 4 3 8 8 Si 1.86806 * 119.99938 * 203.38288 * 6 4 3 9 9 H 1.48503 * 109.46695 * 60.00738 * 8 6 4 10 10 H 1.48500 * 109.46756 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47230 * 300.00369 * 8 6 4 12 12 C 1.46504 * 120.00269 * 95.33869 * 3 2 1 13 13 C 1.50699 * 109.46989 * 270.00205 * 12 3 2 14 14 C 1.35489 * 125.50582 * 264.97274 * 13 12 3 15 15 C 1.39799 * 107.84124 * 180.02562 * 14 13 12 16 16 C 1.37991 * 106.97020 * 359.73945 * 15 14 13 17 17 C 1.46498 * 126.26762 * 180.25559 * 16 15 14 18 18 O 1.21618 * 119.99348 * 0.19226 * 17 16 15 19 19 O 1.34889 * 120.00351 * 180.18737 * 17 16 15 20 20 N 1.34960 * 125.50788 * 84.99595 * 13 12 3 21 21 H 0.96999 * 125.63738 * 359.97438 * 20 13 12 22 22 H 1.09001 * 109.47205 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47412 * 299.99516 * 1 2 3 24 24 H 1.08998 * 109.47637 * 60.00124 * 1 2 3 25 25 H 1.08999 * 109.47077 * 239.99783 * 2 1 3 26 26 H 1.09000 * 109.47121 * 119.99832 * 2 1 3 27 27 H 0.97001 * 120.00115 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47132 * 150.00159 * 12 3 2 29 29 H 1.08996 * 109.46631 * 29.99845 * 12 3 2 30 30 H 1.07993 * 126.07812 * 0.05925 * 14 13 12 31 31 H 1.08000 * 126.51615 * 180.02562 * 15 14 13 32 32 H 0.96697 * 117.00227 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1425 2.0635 -1.1808 5 1 1.4415 1.8864 -1.9831 6 6 3.1692 2.9829 -1.3465 7 7 4.2606 2.8892 -0.6168 8 14 3.0021 4.3529 -2.6054 9 1 1.8215 5.1898 -2.2722 10 1 4.2263 5.1934 -2.5876 11 1 2.8261 3.7641 -3.9572 12 6 2.3738 2.0326 1.2632 13 6 1.1619 2.7274 1.8285 14 6 0.8504 4.0341 1.6523 15 6 -0.3441 4.2853 2.3338 16 6 -0.7355 3.0954 2.9127 17 6 -1.9370 2.8797 3.7227 18 8 -2.7006 3.8020 3.9352 19 8 -2.1962 1.6581 4.2327 20 7 0.2118 2.1486 2.5926 21 1 0.1965 1.2185 2.8673 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.9782 3.5314 -0.7328 28 1 3.1621 2.7640 1.0856 29 1 2.7264 1.2831 1.9717 30 1 1.4227 4.7535 1.0856 31 1 -0.8644 5.2300 2.3920 32 1 -3.0007 1.5646 4.7610 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605411574.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:14 Heat of formation + Delta-G solvation = -31.405817 kcal Electronic energy + Delta-G solvation = -17112.126368 eV Core-core repulsion = 14267.021635 eV Total energy + Delta-G solvation = -2845.104733 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90010 -39.34143 -36.00354 -35.86377 -32.02030 -30.58699 -30.46289 -28.49212 -25.97369 -23.94617 -22.52886 -20.65832 -20.10608 -19.40951 -18.29110 -17.34080 -16.69342 -15.52511 -15.01900 -14.51113 -14.10155 -13.81974 -13.40385 -13.27962 -12.96553 -12.50580 -12.27937 -12.09426 -11.82138 -11.48710 -11.26222 -11.03655 -10.76084 -10.61107 -10.58796 -10.23699 -10.07344 -9.94890 -8.58714 -8.47197 -7.58984 -6.79490 -5.92869 -3.45156 1.59823 3.15443 3.22409 3.35482 3.41197 3.45621 3.61080 3.72373 4.43174 5.20794 5.44546 5.47893 5.76914 5.86900 5.88354 5.93445 6.22903 6.24824 6.38991 6.45625 6.48099 6.64825 6.76815 6.81148 6.99697 7.28222 7.40187 7.61048 7.74025 7.94147 8.08604 8.37777 9.03671 9.67238 10.21516 11.09727 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.028226 B = 0.007784 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.737838 B = 3596.448301 C = 4107.173330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.139 3.861 3 N -0.574 5.574 4 C -0.258 4.258 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.281 1.281 12 C 0.188 3.812 13 C 0.099 3.901 14 C -0.211 4.211 15 C -0.087 4.087 16 C -0.088 4.088 17 C 0.556 3.444 18 O -0.525 6.525 19 O -0.525 6.525 20 N -0.525 5.525 21 H 0.414 0.586 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.258 0.742 28 H 0.128 0.872 29 H 0.037 0.963 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.568 -2.963 7.012 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 N -0.293 5.293 4 C -0.388 4.388 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.207 1.207 12 C 0.060 3.940 13 C -0.025 4.025 14 C -0.234 4.234 15 C -0.115 4.115 16 C -0.197 4.197 17 C 0.404 3.596 18 O -0.415 6.415 19 O -0.337 6.337 20 N -0.121 5.121 21 H 0.251 0.749 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.145 0.855 29 H 0.056 0.944 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -6.274 -2.755 6.877 9.708 hybrid contribution -0.867 0.313 -0.182 0.940 sum -7.141 -2.442 6.695 10.089 Atomic orbital electron populations 1.22366 0.99951 0.99079 1.01476 1.20922 0.91736 0.86912 0.99186 1.43784 1.75544 1.08011 1.01998 1.18965 1.07815 1.19172 0.92801 0.91980 1.25052 0.93973 1.01139 0.98358 1.69927 1.04440 1.35947 1.42615 0.86466 0.77280 0.82425 0.81300 1.20490 1.21498 1.20739 1.19992 0.90830 0.97424 0.85719 1.22648 0.94012 0.93857 0.91937 1.20688 0.99272 0.96055 1.07383 1.21289 0.96634 0.95651 0.97891 1.18969 0.94796 0.91835 1.14069 1.19653 0.84058 0.79575 0.76354 1.90899 1.48360 1.43395 1.58876 1.84615 1.48591 1.34667 1.65816 1.41971 1.18743 1.10965 1.40459 0.74890 0.94346 0.94035 0.92962 0.93180 0.94706 0.93160 0.85481 0.94425 0.84109 0.84146 0.73265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 10.21 37.16 0.38 -2.59 16 2 C 0.14 2.71 6.44 -4.04 -0.03 2.69 16 3 N -0.57 -13.19 2.44 -174.61 -0.43 -13.62 16 4 C -0.26 -6.65 9.48 -15.06 -0.14 -6.80 16 5 H 0.06 1.63 7.93 -52.48 -0.42 1.21 16 6 C 0.01 0.39 4.94 -17.43 -0.09 0.30 16 7 N -0.89 -23.74 11.35 55.49 0.63 -23.11 16 8 Si 0.90 20.72 29.61 -169.99 -5.03 15.68 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.19 4.03 5.86 -5.19 -0.03 4.00 16 13 C 0.10 1.94 6.59 -82.20 -0.54 1.40 16 14 C -0.21 -4.18 10.71 -39.98 -0.43 -4.61 16 15 C -0.09 -1.60 10.66 -39.09 -0.42 -2.02 16 16 C -0.09 -1.54 7.10 -81.99 -0.58 -2.13 16 17 C 0.56 8.93 8.30 34.06 0.28 9.21 16 18 O -0.53 -9.56 17.67 -19.36 -0.34 -9.90 16 19 O -0.52 -6.38 13.44 -41.01 -0.55 -6.94 16 20 N -0.53 -8.94 4.99 -5.82 -0.03 -8.97 16 21 H 0.41 6.16 8.48 -40.82 -0.35 5.82 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.04 0.72 6.36 -51.93 -0.33 0.39 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 26 H 0.03 0.62 7.83 -51.93 -0.41 0.21 16 27 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.13 3.09 5.34 -51.93 -0.28 2.81 16 29 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 30 H 0.14 2.85 8.06 -52.49 -0.42 2.42 16 31 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.41 2.92 9.11 45.56 0.42 3.34 16 LS Contribution 282.82 15.07 4.26 4.26 Total: -1.00 -29.35 282.82 -6.10 -35.45 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -3.02 Total: 7.68 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.59 Total: -0.54 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.17 Total: -45.70 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.89 Total: -16.84 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.35 -6.10 -35.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411574.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.046 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds