Wall clock time and date at job start Sun Mar 29 2020 21:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47038 * 2 1 4 4 C 1.36939 * 119.99985 * 275.33996 * 3 2 1 5 5 H 1.08005 * 119.99786 * 34.11305 * 4 3 2 6 6 C 1.38809 * 119.99901 * 214.11056 * 4 3 2 7 7 N 1.31616 * 120.00094 * 23.39525 * 6 4 3 8 8 Si 1.86806 * 119.99938 * 203.38288 * 6 4 3 9 9 H 1.48503 * 109.46695 * 60.00738 * 8 6 4 10 10 H 1.48500 * 109.46756 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47230 * 300.00369 * 8 6 4 12 12 C 1.46504 * 120.00269 * 95.33869 * 3 2 1 13 13 C 1.50699 * 109.46989 * 270.00205 * 12 3 2 14 14 C 1.35489 * 125.50582 * 264.97274 * 13 12 3 15 15 C 1.39799 * 107.84124 * 180.02562 * 14 13 12 16 16 C 1.37991 * 106.97020 * 359.73945 * 15 14 13 17 17 C 1.46498 * 126.26762 * 180.25559 * 16 15 14 18 18 O 1.21618 * 119.99348 * 0.19226 * 17 16 15 19 19 O 1.34889 * 120.00351 * 180.18737 * 17 16 15 20 20 N 1.34960 * 125.50788 * 84.99595 * 13 12 3 21 21 H 0.96999 * 125.63738 * 359.97438 * 20 13 12 22 22 H 1.09001 * 109.47205 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47412 * 299.99516 * 1 2 3 24 24 H 1.08998 * 109.47637 * 60.00124 * 1 2 3 25 25 H 1.08999 * 109.47077 * 239.99783 * 2 1 3 26 26 H 1.09000 * 109.47121 * 119.99832 * 2 1 3 27 27 H 0.97001 * 120.00115 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47132 * 150.00159 * 12 3 2 29 29 H 1.08996 * 109.46631 * 29.99845 * 12 3 2 30 30 H 1.07993 * 126.07812 * 0.05925 * 14 13 12 31 31 H 1.08000 * 126.51615 * 180.02562 * 15 14 13 32 32 H 0.96697 * 117.00227 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1425 2.0635 -1.1808 5 1 1.4415 1.8864 -1.9831 6 6 3.1692 2.9829 -1.3465 7 7 4.2606 2.8892 -0.6168 8 14 3.0021 4.3529 -2.6054 9 1 1.8215 5.1898 -2.2722 10 1 4.2263 5.1934 -2.5876 11 1 2.8261 3.7641 -3.9572 12 6 2.3738 2.0326 1.2632 13 6 1.1619 2.7274 1.8285 14 6 0.8504 4.0341 1.6523 15 6 -0.3441 4.2853 2.3338 16 6 -0.7355 3.0954 2.9127 17 6 -1.9370 2.8797 3.7227 18 8 -2.7006 3.8020 3.9352 19 8 -2.1962 1.6581 4.2327 20 7 0.2118 2.1486 2.5926 21 1 0.1965 1.2185 2.8673 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.9782 3.5314 -0.7328 28 1 3.1621 2.7640 1.0856 29 1 2.7264 1.2831 1.9717 30 1 1.4227 4.7535 1.0856 31 1 -0.8644 5.2300 2.3920 32 1 -3.0007 1.5646 4.7610 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605411574.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:14 Heat of formation + Delta-G solvation = -49.937971 kcal Electronic energy + Delta-G solvation = -17112.929982 eV Core-core repulsion = 14267.021635 eV Total energy + Delta-G solvation = -2845.908347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.31567 -40.60579 -37.67045 -37.07712 -33.84963 -32.11067 -31.95481 -30.09077 -27.64610 -25.59741 -23.92683 -22.29467 -21.55888 -20.87047 -19.60159 -18.78503 -18.30223 -16.85151 -16.77437 -16.00174 -15.73047 -15.58018 -14.83131 -14.62007 -14.36279 -14.14025 -13.78877 -13.58053 -13.40274 -13.12056 -12.64207 -12.60832 -12.52688 -12.35124 -12.12683 -11.87933 -11.81082 -11.55285 -10.51221 -9.90919 -9.08191 -8.65067 -7.86506 -5.41607 0.24527 1.47988 1.53230 1.58890 1.75275 1.95938 2.19658 2.39939 2.54381 3.25468 3.77859 4.22573 4.23406 4.38604 4.43466 4.51395 4.74198 4.77673 4.85262 5.03026 5.10033 5.25185 5.30835 5.49619 5.52633 5.59140 5.73118 5.89209 6.09448 6.44025 6.60790 6.97107 7.14661 7.82857 8.32410 9.12217 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.028226 B = 0.007784 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.737838 B = 3596.448301 C = 4107.173330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.134 3.866 3 N -0.589 5.589 4 C -0.265 4.265 5 H 0.051 0.949 6 C -0.023 4.023 7 N -0.910 5.910 8 Si 0.945 3.055 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.279 1.279 12 C 0.194 3.806 13 C 0.090 3.910 14 C -0.227 4.227 15 C -0.099 4.099 16 C -0.081 4.081 17 C 0.568 3.432 18 O -0.546 6.546 19 O -0.510 6.510 20 N -0.509 5.509 21 H 0.426 0.574 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.029 0.971 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.255 0.745 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.127 0.873 31 H 0.153 0.847 32 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 -3.941 8.042 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 N -0.309 5.309 4 C -0.395 4.395 5 H 0.069 0.931 6 C -0.221 4.221 7 N -0.553 5.553 8 Si 0.773 3.227 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.205 1.205 12 C 0.066 3.934 13 C -0.034 4.034 14 C -0.251 4.251 15 C -0.126 4.126 16 C -0.191 4.191 17 C 0.415 3.585 18 O -0.438 6.438 19 O -0.324 6.324 20 N -0.105 5.105 21 H 0.266 0.734 22 H 0.088 0.912 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.170 0.830 32 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -7.757 -3.783 7.933 11.722 hybrid contribution -0.495 0.528 -0.411 0.832 sum -8.251 -3.255 7.522 11.630 Atomic orbital electron populations 1.22205 0.98125 1.00789 1.00432 1.21056 0.93042 0.85296 0.99715 1.43956 1.75922 1.09365 1.01663 1.19059 1.07192 1.19571 0.93644 0.93144 1.25541 0.93906 1.02644 0.99981 1.70018 1.04886 1.36472 1.43967 0.85702 0.76811 0.80398 0.79757 1.20770 1.21592 1.20530 1.19735 0.90882 0.97121 0.85629 1.22146 0.94196 0.93780 0.93310 1.20696 1.00119 0.96270 1.08013 1.21431 0.96311 0.96789 0.98108 1.19207 0.95074 0.91503 1.13323 1.19293 0.83072 0.80257 0.75864 1.90906 1.48859 1.44484 1.59570 1.84547 1.50152 1.32108 1.65601 1.41793 1.17798 1.11466 1.39491 0.73435 0.91204 0.93803 0.95177 0.94333 0.92455 0.93523 0.88433 0.92812 0.85520 0.82977 0.70268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.13 10.21 71.98 0.73 -4.40 16 2 C 0.13 5.05 6.44 86.38 0.56 5.61 16 3 N -0.59 -26.88 2.44 -706.35 -1.73 -28.60 16 4 C -0.26 -13.76 9.48 84.03 0.80 -12.96 16 5 H 0.05 2.69 7.93 -2.91 -0.02 2.67 16 6 C -0.02 -1.19 4.94 84.86 0.42 -0.77 16 7 N -0.91 -49.53 11.35 21.65 0.25 -49.29 16 8 Si 0.94 43.17 29.61 68.60 2.03 45.20 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.19 8.26 5.86 85.63 0.50 8.76 16 13 C 0.09 3.44 6.59 41.44 0.27 3.71 16 14 C -0.23 -9.03 10.71 22.01 0.24 -8.79 16 15 C -0.10 -3.54 10.66 22.59 0.24 -3.30 16 16 C -0.08 -2.67 7.10 40.32 0.29 -2.39 16 17 C 0.57 16.49 8.30 69.97 0.58 17.07 16 18 O -0.55 -18.46 17.67 19.45 0.34 -18.12 16 19 O -0.51 -10.29 13.44 -58.03 -0.78 -11.07 16 20 N -0.51 -16.22 4.99 -172.32 -0.86 -17.08 16 21 H 0.43 11.36 8.48 -92.71 -0.79 10.58 16 22 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.04 1.40 6.36 -2.39 -0.02 1.38 16 24 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 26 H 0.06 1.89 7.83 -2.39 -0.02 1.87 16 27 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 28 H 0.10 4.84 5.34 -2.39 -0.01 4.82 16 29 H 0.05 2.06 7.86 -2.39 -0.02 2.04 16 30 H 0.13 5.30 8.06 -2.91 -0.02 5.28 16 31 H 0.15 4.94 8.06 -2.91 -0.02 4.91 16 32 H 0.43 4.26 9.11 -74.06 -0.67 3.59 16 Total: -1.00 -62.16 282.82 3.58 -58.58 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.30 Total: 17.83 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 4.63 Total: 2.54 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -2.34 Total: -94.97 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.44 Total: -29.19 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -62.16 3.58 -58.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411574.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.647 kcal (2) G-P(sol) polarization free energy of solvation -62.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds