Wall clock time and date at job start Sun Mar 29 2020 22:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47421 * 2 1 4 4 C 1.50703 * 109.46956 * 240.00213 * 2 1 3 5 5 H 1.07998 * 119.99610 * 275.00159 * 4 2 1 6 6 C 1.37879 * 120.00015 * 95.00537 * 4 2 1 7 7 N 1.31507 * 119.99847 * 184.91397 * 6 4 2 8 8 Si 1.86797 * 120.00021 * 4.91287 * 6 4 2 9 9 H 1.48503 * 109.47008 * 84.83260 * 8 6 4 10 10 H 1.48494 * 109.47174 * 204.83334 * 8 6 4 11 11 H 1.48507 * 109.47349 * 324.83472 * 8 6 4 12 12 N 1.46497 * 109.47076 * 120.00152 * 2 1 3 13 13 C 1.34774 * 120.00135 * 274.99904 * 12 2 1 14 14 O 1.21284 * 120.00158 * 359.97438 * 13 12 2 15 15 C 1.50702 * 120.00206 * 179.97438 * 13 12 2 16 16 N 1.46500 * 109.47241 * 180.02562 * 15 13 12 17 17 N 1.40062 * 126.04094 * 270.03926 * 16 15 13 18 18 C 1.30842 * 108.39140 * 179.97438 * 17 16 15 19 19 C 1.39775 * 108.31979 * 359.74502 * 18 17 16 20 20 C 1.35244 * 126.04206 * 90.00012 * 16 15 13 21 21 N 1.39207 * 126.22176 * 0.03629 * 20 16 15 22 22 H 1.09003 * 109.46793 * 295.03691 * 1 2 3 23 23 H 1.09002 * 109.46771 * 55.03173 * 1 2 3 24 24 H 1.08998 * 109.47308 * 175.03466 * 1 2 3 25 25 H 0.97002 * 119.99876 * 179.97438 * 7 6 4 26 26 H 0.97003 * 120.00280 * 94.99833 * 12 2 1 27 27 H 1.08998 * 109.47090 * 60.00001 * 15 13 12 28 28 H 1.08999 * 109.46930 * 300.00218 * 15 13 12 29 29 H 1.07992 * 125.84321 * 179.97438 * 18 17 16 30 30 H 1.07996 * 126.09289 * 180.26935 * 19 18 17 31 31 H 0.96997 * 120.00388 * 359.97438 * 21 20 16 32 32 H 0.96998 * 119.99912 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2291 6 6 2.3603 0.0122 -2.3581 7 7 2.7060 -0.6130 -3.4622 8 14 2.3137 1.8791 -2.3174 9 1 3.5993 2.3948 -1.7820 10 1 2.1060 2.3992 -3.6927 11 1 1.1988 2.3276 -1.4449 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8591 1.1586 2.4115 15 6 2.6489 -0.7289 3.5877 16 7 2.6977 0.2123 4.7093 17 7 3.7887 1.0158 5.0639 18 6 3.4576 1.7212 6.1150 19 6 2.1434 1.3981 6.4647 20 6 1.6970 0.4594 5.5849 21 7 0.4376 -0.1338 5.5836 22 1 -0.3633 0.4349 0.9311 23 1 -0.3633 0.5890 -0.8422 24 1 -0.3634 -1.0238 -0.0889 25 1 2.9364 -0.1047 -4.2556 26 1 2.2490 -1.6318 1.1526 27 1 3.6480 -1.1215 3.3986 28 1 1.9759 -1.5507 3.8325 29 1 4.0899 2.4342 6.6229 30 1 1.5829 1.8164 7.2876 31 1 0.2125 -0.7926 4.9082 32 1 -0.2150 0.1123 6.2576 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633298791.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:34 Heat of formation + Delta-G solvation = 43.945672 kcal Electronic energy + Delta-G solvation = -16792.351856 eV Core-core repulsion = 13982.807360 eV Total energy + Delta-G solvation = -2809.544496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02950 -38.93042 -35.02593 -34.54724 -32.95996 -32.36940 -30.01393 -28.14176 -26.98335 -25.36577 -21.80548 -21.07949 -20.20203 -19.68688 -17.82769 -17.41537 -16.34271 -16.23765 -15.62038 -14.93049 -14.57141 -14.38483 -13.82603 -13.37049 -13.00997 -12.88578 -12.58898 -12.48524 -12.10258 -11.47055 -11.15762 -10.98773 -10.87539 -10.64857 -10.37167 -9.93203 -9.61427 -9.27457 -8.78192 -8.60921 -8.21323 -7.63086 -6.28850 -4.33181 2.18824 2.51556 3.05397 3.15901 3.24353 3.31760 3.39159 3.67045 3.95531 4.28554 4.65223 5.03656 5.08086 5.24277 5.29484 5.63520 5.86324 6.05379 6.25514 6.41980 6.52002 6.59263 6.84877 6.91156 7.09021 7.28690 7.40825 7.45495 7.55907 8.03883 8.09018 8.45147 8.70112 8.82650 9.32918 10.82647 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039255 B = 0.006013 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.106527 B = 4655.396694 C = 4841.755994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.232 3.768 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.080 0.920 6 C 0.083 3.917 7 N -0.887 5.887 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.700 5.700 13 C 0.480 3.520 14 O -0.537 6.537 15 C 0.113 3.887 16 N -0.377 5.377 17 N -0.300 5.300 18 C 0.073 3.927 19 C -0.354 4.354 20 C 0.374 3.626 21 N -0.857 5.857 22 H 0.027 0.973 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.269 0.731 26 H 0.394 0.606 27 H 0.123 0.877 28 H 0.108 0.892 29 H 0.179 0.821 30 H 0.140 0.860 31 H 0.397 0.603 32 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 -1.490 17.017 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.130 3.870 3 H 0.068 0.932 4 C -0.570 4.570 5 H 0.098 0.902 6 C -0.122 4.122 7 N -0.523 5.523 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.186 1.186 12 N -0.350 5.350 13 C 0.263 3.737 14 O -0.414 6.414 15 C -0.014 4.014 16 N -0.165 5.165 17 N -0.120 5.120 18 C -0.115 4.115 19 C -0.388 4.388 20 C 0.147 3.853 21 N -0.406 5.406 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.227 0.773 27 H 0.141 0.859 28 H 0.126 0.874 29 H 0.196 0.804 30 H 0.158 0.842 31 H 0.225 0.775 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.423 -0.929 15.866 16.077 hybrid contribution -0.923 0.491 0.292 1.085 sum -3.345 -0.438 16.158 16.506 Atomic orbital electron populations 1.22211 0.98520 1.00561 0.99222 1.19151 0.90904 0.94401 0.82592 0.93232 1.20982 1.45534 0.95616 0.94865 0.90235 1.24930 0.93483 0.98641 0.95155 1.69872 1.44441 1.36264 1.01697 0.86903 0.79891 0.85794 0.77385 1.19765 1.21069 1.18596 1.46642 1.64923 1.13896 1.09553 1.20774 0.79568 0.88215 0.85155 1.90719 1.50272 1.15605 1.84836 1.21473 1.05419 0.90111 0.84361 1.47796 1.09912 1.35509 1.23281 1.77452 1.07539 1.09838 1.17215 1.23462 0.95434 0.98383 0.94195 1.20465 0.98868 1.10391 1.09087 1.17930 0.83247 0.93362 0.90760 1.41488 1.11769 1.49281 1.38058 0.95413 0.92825 0.93343 0.92142 0.77262 0.85933 0.87378 0.80392 0.84181 0.77454 0.75520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.47 37.16 0.35 -2.78 16 2 C 0.23 5.43 2.22 -69.08 -0.15 5.28 16 3 H 0.05 1.30 4.73 -51.93 -0.25 1.06 16 4 C -0.53 -14.06 9.05 -34.44 -0.31 -14.37 16 5 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 7 N -0.89 -25.90 13.96 55.43 0.77 -25.12 16 8 Si 0.87 21.76 26.99 -169.99 -4.59 17.17 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.26 -6.45 6.82 56.52 0.39 -6.07 16 12 N -0.70 -13.41 5.07 -54.93 -0.28 -13.69 16 13 C 0.48 9.04 7.86 -10.99 -0.09 8.96 16 14 O -0.54 -12.67 16.09 5.55 0.09 -12.58 16 15 C 0.11 1.57 6.73 -5.19 -0.03 1.54 16 16 N -0.38 -6.01 3.11 -61.63 -0.19 -6.20 16 17 N -0.30 -5.20 12.56 30.60 0.38 -4.82 16 18 C 0.07 1.05 12.01 -17.40 -0.21 0.84 16 19 C -0.35 -4.82 10.84 -39.75 -0.43 -5.25 16 20 C 0.37 5.28 7.97 -153.41 -1.22 4.05 16 21 N -0.86 -8.65 9.10 31.11 0.28 -8.36 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.39 6.34 8.59 -40.82 -0.35 5.99 16 27 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.11 1.05 7.49 -51.93 -0.39 0.66 16 29 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.40 3.57 8.09 -40.82 -0.33 3.24 16 32 H 0.41 3.07 8.96 -40.82 -0.37 2.71 16 LS Contribution 282.45 15.07 4.26 4.26 Total: -1.00 -35.10 282.45 -5.26 -40.36 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.79 Total: 8.52 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.20 Total: 0.47 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.97 Total: -58.19 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.59 Total: 17.17 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -35.10 -5.26 -40.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633298791.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.307 kcal (2) G-P(sol) polarization free energy of solvation -35.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds