Wall clock time and date at job start Sun Mar 29 2020 22:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 N 1.46496 * 109.47214 * 179.97438 * 15 13 12 17 17 N 1.40063 * 126.04340 * 269.69272 * 16 15 13 18 18 C 1.30844 * 108.38702 * 179.82024 * 17 16 15 19 19 C 1.39773 * 108.32295 * 0.43676 * 18 17 16 20 20 C 1.35248 * 126.04026 * 90.00731 * 16 15 13 21 21 N 1.39209 * 126.22318 * 359.97438 * 20 16 15 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 26 26 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 27 27 H 1.08997 * 109.47364 * 300.00354 * 15 13 12 28 28 H 1.09001 * 109.46822 * 60.00123 * 15 13 12 29 29 H 1.08004 * 125.83827 * 180.16527 * 18 17 16 30 30 H 1.07997 * 126.09498 * 179.69692 * 19 18 17 31 31 H 0.96997 * 119.99448 * 0.02562 * 21 20 16 32 32 H 0.96995 * 120.00191 * 180.02562 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 7 2.6976 0.2127 -4.7093 17 7 1.6633 0.4642 -5.6197 18 6 2.0755 1.3655 -6.4739 19 6 3.3888 1.7136 -6.1460 20 6 3.7513 0.9880 -5.0522 21 7 4.9826 1.0361 -4.4044 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7096 1.1617 3.4844 26 1 2.2491 -1.6316 -1.1527 27 1 3.6479 -1.1211 -3.3988 28 1 1.9759 -1.5504 -3.8327 29 1 1.5008 1.7682 -7.2950 30 1 4.0062 2.4300 -6.6674 31 1 5.1445 0.4769 -3.6286 32 1 5.6785 1.6288 -4.7288 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633298793.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:36 Heat of formation + Delta-G solvation = 17.509801 kcal Electronic energy + Delta-G solvation = -16704.505148 eV Core-core repulsion = 13893.814307 eV Total energy + Delta-G solvation = -2810.690841 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.10246 -40.41235 -36.79503 -35.49032 -34.45145 -33.93640 -31.10230 -29.15663 -28.12972 -27.35352 -23.49552 -22.18552 -21.64839 -21.07230 -19.23023 -18.49537 -17.69818 -17.19319 -17.08290 -16.44888 -16.12497 -15.61611 -15.28526 -14.61596 -14.53271 -14.25633 -13.97402 -13.70600 -13.19587 -13.00408 -12.83426 -12.76205 -12.31455 -12.12543 -11.95160 -11.45989 -11.13357 -11.09323 -10.63766 -9.84089 -9.79082 -8.61411 -8.19328 -6.37554 1.08909 1.44701 1.45652 1.50279 1.57804 1.65605 2.13075 2.33808 2.56872 2.92312 3.11708 3.66447 3.87467 4.09663 4.27245 4.64312 4.70117 4.86135 4.86942 5.05447 5.13002 5.37618 5.56415 5.59375 5.64670 5.84889 5.91723 6.05506 6.54118 6.65589 6.70603 6.87767 7.11992 7.29649 7.47702 8.87411 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.047180 B = 0.005275 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.326141 B = 5306.726048 C = 5535.562737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.273 3.727 3 H -0.004 1.004 4 C -0.543 4.543 5 H 0.080 0.920 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.975 3.025 9 H -0.256 1.256 10 H -0.285 1.285 11 H -0.281 1.281 12 N -0.697 5.697 13 C 0.480 3.520 14 O -0.590 6.590 15 C 0.122 3.878 16 N -0.393 5.393 17 N -0.349 5.349 18 C 0.070 3.930 19 C -0.366 4.366 20 C 0.364 3.636 21 N -0.843 5.843 22 H 0.066 0.934 23 H 0.043 0.957 24 H 0.005 0.995 25 H 0.265 0.735 26 H 0.410 0.590 27 H 0.152 0.848 28 H 0.143 0.857 29 H 0.208 0.792 30 H 0.164 0.836 31 H 0.403 0.597 32 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.670 -5.041 -13.004 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.169 3.831 3 H 0.014 0.986 4 C -0.581 4.581 5 H 0.098 0.902 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.800 3.200 9 H -0.179 1.179 10 H -0.211 1.211 11 H -0.207 1.207 12 N -0.348 5.348 13 C 0.265 3.735 14 O -0.470 6.470 15 C -0.004 4.004 16 N -0.181 5.181 17 N -0.170 5.170 18 C -0.116 4.116 19 C -0.400 4.400 20 C 0.136 3.864 21 N -0.394 5.394 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.024 0.976 25 H 0.074 0.926 26 H 0.246 0.754 27 H 0.170 0.830 28 H 0.161 0.839 29 H 0.225 0.775 30 H 0.181 0.819 31 H 0.233 0.767 32 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 7.355 -4.942 -12.481 15.307 hybrid contribution 0.927 0.281 1.068 1.442 sum 8.283 -4.662 -11.413 14.852 Atomic orbital electron populations 1.21911 0.98669 0.99524 0.99238 1.18328 0.90855 0.91898 0.82018 0.98640 1.21570 1.32541 1.13597 0.90433 0.90222 1.25852 0.94844 0.95548 1.02544 1.70074 1.37133 1.24108 1.24586 0.85247 0.78028 0.78546 0.78201 1.17910 1.21096 1.20697 1.46184 1.64963 1.14383 1.09228 1.21587 0.78542 0.87552 0.85853 1.90707 1.52267 1.18523 1.85509 1.21571 1.06944 0.90939 0.80927 1.47909 1.09720 1.35810 1.24678 1.77350 1.10508 1.24073 1.05054 1.24069 0.95064 0.94318 0.98166 1.20868 0.99696 1.14271 1.05183 1.18336 0.83836 0.91627 0.92581 1.41513 1.11162 1.51236 1.35456 0.91566 0.93795 0.97620 0.92589 0.75414 0.83007 0.83905 0.77502 0.81850 0.76735 0.73996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.93 9.26 71.98 0.67 -6.27 16 2 C 0.27 13.94 2.56 44.24 0.11 14.06 16 3 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 4 C -0.54 -27.83 8.73 25.60 0.22 -27.61 16 5 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -52.71 11.32 21.45 0.24 -52.47 16 8 Si 0.98 40.97 29.54 68.60 2.03 43.00 16 9 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 12 N -0.70 -27.29 5.07 -446.09 -2.26 -29.55 16 13 C 0.48 18.62 7.86 87.66 0.69 19.31 16 14 O -0.59 -29.91 16.09 -3.05 -0.05 -29.96 16 15 C 0.12 3.25 6.73 85.63 0.58 3.83 16 16 N -0.39 -12.35 3.11 -348.93 -1.08 -13.43 16 17 N -0.35 -11.98 12.56 -57.08 -0.72 -12.70 16 18 C 0.07 1.98 12.01 85.21 1.02 3.00 16 19 C -0.37 -9.72 10.84 22.16 0.24 -9.48 16 20 C 0.36 10.15 7.97 131.43 1.05 11.20 16 21 N -0.84 -16.75 9.10 -55.50 -0.51 -17.26 16 22 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 23 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 25 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.41 12.60 8.54 -92.71 -0.79 11.81 16 27 H 0.15 2.64 7.50 -2.39 -0.02 2.62 16 28 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.21 4.15 8.06 -2.91 -0.02 4.13 16 30 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 31 H 0.40 7.18 8.09 -92.71 -0.75 6.43 16 32 H 0.43 6.10 8.96 -92.71 -0.83 5.27 16 Total: -1.00 -76.51 282.71 1.48 -75.03 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -1.20 Total: 28.22 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.03 Total: 9.12 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -4.33 Total: -125.40 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.05 Total: -29.96 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -76.51 1.48 -75.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633298793.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.537 kcal (2) G-P(sol) polarization free energy of solvation -76.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds