Wall clock time and date at job start Sun Mar 29 2020 22:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35496 * 126.97923 * 2 1 4 4 N 1.30526 * 107.30755 * 180.22584 * 3 2 1 5 5 N 1.28599 * 109.66994 * 359.77565 * 4 3 2 6 6 C 1.30519 * 109.67225 * 359.97438 * 5 4 3 7 7 C 1.50706 * 126.34184 * 179.97438 * 6 5 4 8 8 N 1.46893 * 109.46856 * 90.02316 * 7 6 5 9 9 C 1.47962 * 110.99743 * 189.99657 * 8 7 6 10 10 C 1.53936 * 86.18332 * 222.41627 * 9 8 7 11 11 O 1.42894 * 113.73440 * 269.25749 * 10 9 8 12 12 C 1.50704 * 113.73380 * 138.07916 * 10 9 8 13 13 H 1.07997 * 119.99971 * 17.16232 * 12 10 9 14 14 C 1.37872 * 119.99947 * 197.16584 * 12 10 9 15 15 N 1.31517 * 120.00073 * 194.36608 * 14 12 10 16 16 Si 1.86807 * 120.00060 * 14.36933 * 14 12 10 17 17 H 1.48504 * 109.46906 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47025 * 299.99893 * 16 14 12 19 19 H 1.48499 * 109.46999 * 59.99879 * 16 14 12 20 20 C 1.48195 * 111.07372 * 90.56836 * 8 7 6 21 21 H 1.09004 * 109.46808 * 270.15224 * 1 2 3 22 22 H 1.09001 * 109.47246 * 30.14744 * 1 2 3 23 23 H 1.08995 * 109.47207 * 150.15872 * 1 2 3 24 24 H 1.08004 * 126.34640 * 0.02562 * 3 2 1 25 25 H 1.08997 * 109.47133 * 330.01884 * 7 6 5 26 26 H 1.08996 * 109.46640 * 210.01942 * 7 6 5 27 27 H 1.09008 * 113.75926 * 108.09866 * 9 8 7 28 28 H 1.08996 * 113.75837 * 336.73528 * 9 8 7 29 29 H 0.96707 * 114.00278 * 174.15854 * 11 10 9 30 30 H 0.96997 * 119.99760 * 354.86263 * 15 14 12 31 31 H 1.08994 * 113.75444 * 23.23306 * 20 8 7 32 32 H 1.09004 * 113.82345 * 251.80757 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 -0.0049 5 7 3.5091 -0.6430 -0.0032 6 6 2.2801 -1.0823 0.0034 7 6 1.8477 -2.5260 0.0069 8 7 1.7138 -2.9936 1.3929 9 6 1.5251 -4.4603 1.4418 10 6 0.4565 -4.1838 2.5148 11 8 0.9680 -4.1836 3.8491 12 6 -0.7870 -5.0213 2.3626 13 1 -0.7679 -5.9098 1.7488 14 6 -1.9491 -4.6534 3.0067 15 7 -2.9419 -5.5095 3.1123 16 14 -2.1137 -2.9386 3.7294 17 1 -3.4491 -2.7946 4.3630 18 1 -1.0557 -2.7280 4.7500 19 1 -1.9675 -1.9301 2.6493 20 6 0.3368 -2.7790 1.8970 21 1 -0.3633 0.0027 1.0277 22 1 -0.3634 0.8887 -0.5161 23 1 -0.3633 -0.8914 -0.5113 24 1 1.9701 2.1170 0.0004 25 1 2.5936 -3.1299 -0.5099 26 1 0.8885 -2.6192 -0.5023 27 1 2.3934 -5.0026 1.8162 28 1 1.1234 -4.8823 0.5206 29 1 0.3205 -3.9229 4.5185 30 1 -2.8865 -6.3728 2.6736 31 1 -0.4131 -2.7081 1.1092 32 1 0.2574 -1.9802 2.6345 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654251663.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:06 Heat of formation + Delta-G solvation = 79.772751 kcal Electronic energy + Delta-G solvation = -17386.309999 eV Core-core repulsion = 14578.319082 eV Total energy + Delta-G solvation = -2807.990917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.96966 -39.44893 -35.17182 -34.64784 -32.62221 -31.66902 -28.58122 -27.61882 -25.90897 -25.56099 -22.56519 -22.23247 -20.36761 -19.22812 -17.97427 -17.05018 -16.43433 -15.67713 -15.44571 -14.96236 -14.80067 -14.53121 -13.61318 -13.44349 -13.24199 -12.99077 -12.70589 -12.19437 -11.68028 -11.60676 -11.25562 -11.07019 -10.73206 -10.42477 -10.22196 -10.12246 -9.86545 -9.46533 -9.12861 -8.98384 -8.54129 -8.16424 -6.73641 -4.47281 1.89194 2.54096 3.01466 3.06545 3.11045 3.31797 4.15260 4.28999 4.47222 4.56730 4.62928 4.87257 4.94504 4.97042 5.25077 5.40528 5.44346 5.57617 5.67629 5.71745 5.88971 6.02195 6.18235 6.23494 6.42645 6.71558 6.83104 6.89887 7.47809 7.61095 8.06113 8.56184 8.79605 8.87539 9.27752 10.61474 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.033427 B = 0.008017 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.438938 B = 3491.770423 C = 3888.507561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.474 5.474 3 C 0.139 3.861 4 N -0.301 5.301 5 N -0.288 5.288 6 C 0.202 3.798 7 C 0.100 3.900 8 N -0.467 5.467 9 C 0.029 3.971 10 C 0.208 3.792 11 O -0.563 6.563 12 C -0.619 4.619 13 H 0.066 0.934 14 C 0.034 3.966 15 N -0.890 5.890 16 Si 1.047 2.953 17 H -0.281 1.281 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.041 4.041 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.215 0.785 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.363 0.637 30 H 0.273 0.727 31 H 0.073 0.927 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 10.515 -6.496 12.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.165 5.165 3 C -0.149 4.149 4 N -0.141 5.141 5 N -0.129 5.129 6 C -0.066 4.066 7 C -0.031 4.031 8 N -0.190 5.190 9 C -0.099 4.099 10 C 0.167 3.833 11 O -0.370 6.370 12 C -0.657 4.657 13 H 0.084 0.916 14 C -0.173 4.173 15 N -0.523 5.523 16 Si 0.875 3.125 17 H -0.207 1.207 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.170 4.170 21 H 0.104 0.896 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.232 0.768 25 H 0.122 0.878 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.212 0.788 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.307 11.600 -5.627 13.310 hybrid contribution -1.735 -0.902 -1.176 2.282 sum 1.572 10.698 -6.803 12.775 Atomic orbital electron populations 1.22187 0.75430 1.05042 1.04723 1.46188 1.09185 1.06903 1.54231 1.26325 0.87435 0.94779 1.06346 1.74214 1.18089 1.03652 1.18150 1.74237 1.17125 1.02775 1.18723 1.24761 0.87036 0.91979 1.02784 1.21038 1.01167 0.86390 0.94478 1.68609 1.26357 1.09437 1.14611 1.23945 0.99312 0.88139 0.98524 1.20243 0.92261 0.89734 0.81047 1.86384 1.42468 1.91405 1.16746 1.22319 0.94840 1.12734 1.35757 0.91556 1.25818 0.92811 1.03963 0.94748 1.70812 1.35337 1.08282 1.37866 0.84040 0.76626 0.75044 0.76766 1.20687 1.20631 1.20511 1.25260 0.88972 1.02323 1.00421 0.89612 0.88964 0.89002 0.76836 0.87793 0.92096 0.89689 0.90671 0.78781 0.91663 0.90858 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.95 59.85 0.66 1.32 16 2 N -0.47 -6.36 3.15 -122.69 -0.39 -6.75 16 3 C 0.14 1.81 12.74 -89.94 -1.15 0.67 16 4 N -0.30 -5.23 12.21 29.69 0.36 -4.86 16 5 N -0.29 -5.44 12.21 32.80 0.40 -5.04 16 6 C 0.20 3.35 7.59 -154.99 -1.18 2.17 16 7 C 0.10 1.59 5.15 -4.98 -0.03 1.57 16 8 N -0.47 -8.94 6.14 -239.45 -1.47 -10.41 16 9 C 0.03 0.58 7.34 -2.76 -0.02 0.56 16 10 C 0.21 4.75 1.07 -90.84 -0.10 4.65 16 11 O -0.56 -13.43 13.47 -35.23 -0.47 -13.91 16 12 C -0.62 -16.00 9.04 -34.44 -0.31 -16.31 16 13 H 0.07 1.85 8.06 -52.49 -0.42 1.42 16 14 C 0.03 0.89 5.44 -17.82 -0.10 0.80 16 15 N -0.89 -25.18 13.70 55.43 0.76 -24.42 16 16 Si 1.05 22.38 24.55 -169.99 -4.17 18.21 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -5.58 5.81 56.52 0.33 -5.25 16 19 H -0.28 -5.29 6.48 56.52 0.37 -4.92 16 20 C -0.04 -0.81 4.64 -2.63 -0.01 -0.82 16 21 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.09 0.86 7.19 -51.93 -0.37 0.49 16 24 H 0.22 1.69 8.06 -52.48 -0.42 1.27 16 25 H 0.10 1.55 8.08 -51.93 -0.42 1.13 16 26 H 0.06 0.86 6.45 -51.93 -0.34 0.52 16 27 H 0.08 1.69 8.14 -51.92 -0.42 1.27 16 28 H 0.08 1.38 7.87 -51.93 -0.41 0.97 16 29 H 0.36 8.11 6.07 45.56 0.28 8.39 16 30 H 0.27 7.72 8.73 -40.82 -0.36 7.36 16 31 H 0.07 1.37 7.32 -51.93 -0.38 0.99 16 32 H 0.07 1.37 6.86 -51.93 -0.36 1.01 16 LS Contribution 267.89 15.07 4.04 4.04 Total: -1.00 -32.51 267.89 -6.55 -39.06 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -3.37 Total: 9.49 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.23 Total: -5.40 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.33 Total: -51.49 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.47 Total: -13.91 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.17 Total: 18.21 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.51 -6.55 -39.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654251663.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.834 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds