Wall clock time and date at job start Sun Mar 29 2020 22:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36939 * 119.99793 * 2 1 4 4 H 1.07999 * 120.00209 * 203.04711 * 3 2 1 5 5 C 1.38816 * 119.99967 * 23.04809 * 3 2 1 6 6 N 1.31619 * 119.99949 * 12.92111 * 5 3 2 7 7 Si 1.86800 * 119.99784 * 192.92989 * 5 3 2 8 8 H 1.48494 * 109.47576 * 89.99788 * 7 5 3 9 9 H 1.48506 * 109.46931 * 209.99937 * 7 5 3 10 10 H 1.48502 * 109.47050 * 329.99197 * 7 5 3 11 11 C 1.46495 * 119.99987 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47439 * 90.00237 * 11 2 1 13 13 N 1.46495 * 109.47050 * 179.97438 * 12 11 2 14 14 C 1.34776 * 119.99889 * 180.02562 * 13 12 11 15 15 O 1.21695 * 120.00084 * 359.97438 * 14 13 12 16 16 C 1.46656 * 120.00095 * 180.02562 * 14 13 12 17 17 C 1.36546 * 125.98990 * 179.97438 * 16 14 13 18 18 C 1.40363 * 106.71288 * 180.02562 * 17 16 14 19 19 C 1.35139 * 107.11188 * 0.02562 * 18 17 16 20 20 O 1.33927 * 108.76592 * 359.97438 * 19 18 17 21 21 H 1.08999 * 109.47047 * 275.12343 * 1 2 3 22 22 H 1.08998 * 109.47320 * 35.12488 * 1 2 3 23 23 H 1.08999 * 109.46739 * 155.11858 * 1 2 3 24 24 H 0.96998 * 119.99603 * 180.02562 * 6 5 3 25 25 H 1.09002 * 109.47022 * 329.99629 * 11 2 1 26 26 H 1.09008 * 109.46883 * 210.00214 * 11 2 1 27 27 H 1.08998 * 109.47051 * 59.99871 * 12 11 2 28 28 H 1.09003 * 109.46640 * 299.99750 * 12 11 2 29 29 H 0.97003 * 120.00590 * 359.97438 * 13 12 11 30 30 H 1.08001 * 126.64513 * 0.02562 * 17 16 14 31 31 H 1.07994 * 126.44542 * 179.97438 * 18 17 16 32 32 H 1.07998 * 125.61491 * 180.26370 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2234 -0.3661 5 6 1.5387 2.3401 0.4707 6 7 0.4117 2.2597 1.1458 7 14 2.3158 4.0074 0.1456 8 1 1.7987 4.5534 -1.1349 9 1 1.9758 4.9364 1.2531 10 1 3.7908 3.8578 0.0603 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 7 3.1856 -2.9781 -1.4437 14 6 3.5232 -3.5609 -2.6111 15 8 3.2186 -3.0337 -3.6648 16 6 4.2565 -4.8310 -2.6116 17 6 4.6578 -5.5253 -3.7167 18 6 5.3198 -6.6733 -3.2538 19 6 5.2933 -6.6301 -1.9034 20 8 4.6520 -5.5186 -1.5203 21 1 -0.3633 0.0918 1.0236 22 1 -0.3634 0.8405 -0.5913 23 1 -0.3633 -0.9323 -0.4324 24 1 -0.0154 3.0662 1.4743 25 1 1.6084 -2.0285 0.5130 26 1 3.1500 -1.1385 0.5134 27 1 3.0417 -0.9499 -1.9567 28 1 1.5002 -1.8399 -1.9571 29 1 3.4287 -3.3982 -0.6038 30 1 4.4971 -5.2455 -4.7474 31 1 5.7656 -7.4460 -3.8624 32 1 5.7230 -7.3680 -1.2420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663131824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:02 Heat of formation + Delta-G solvation = 3.591236 kcal Electronic energy + Delta-G solvation = -16228.461829 eV Core-core repulsion = 13384.874682 eV Total energy + Delta-G solvation = -2843.587146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.79784 -39.23944 -36.11318 -34.32664 -33.18044 -31.44278 -30.18251 -28.00600 -25.86696 -24.10269 -22.43246 -21.84581 -20.70861 -20.18330 -18.47902 -16.74643 -16.45209 -16.30963 -15.74501 -14.88848 -14.72518 -14.10038 -13.65679 -13.38600 -13.15856 -13.11224 -12.80606 -12.49951 -12.35191 -11.19700 -10.92170 -10.87079 -10.61117 -10.38764 -10.23472 -10.18858 -9.95550 -9.88805 -9.00943 -8.67921 -8.56909 -6.81177 -5.74747 -3.23253 0.98440 2.20137 2.58950 3.25004 3.35064 3.39665 3.45784 3.47217 4.49031 4.59303 4.73008 4.91001 5.38410 5.47406 5.59035 5.60906 5.70508 5.78897 5.87944 6.14482 6.23020 6.48291 6.61690 6.65171 6.75115 6.85997 7.35800 7.63096 7.70655 7.79754 8.22083 8.37063 9.20484 9.82611 10.30652 11.30099 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.048112 B = 0.004352 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.829840 B = 6432.036641 C = 6572.899857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.597 5.597 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.143 3.857 12 C 0.092 3.908 13 N -0.710 5.710 14 C 0.594 3.406 15 O -0.524 6.524 16 C -0.069 4.069 17 C -0.129 4.129 18 C -0.226 4.226 19 C -0.013 4.013 20 O -0.163 6.163 21 H 0.033 0.967 22 H 0.042 0.958 23 H -0.001 1.001 24 H 0.253 0.747 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.402 0.598 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.049 -17.320 -4.350 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.014 3.986 12 C -0.033 4.033 13 N -0.360 5.360 14 C 0.379 3.621 15 O -0.402 6.402 16 C -0.122 4.122 17 C -0.149 4.149 18 C -0.245 4.245 19 C -0.083 4.083 20 O -0.059 6.059 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.018 0.982 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.236 0.764 30 H 0.177 0.823 31 H 0.173 0.827 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.607 -16.618 -4.681 18.866 hybrid contribution 0.583 0.529 0.032 0.788 sum 8.190 -16.089 -4.649 18.643 Atomic orbital electron populations 1.20849 0.82257 0.95641 0.99659 1.43790 1.01977 1.00278 1.85910 1.19216 0.98426 0.85504 1.35917 0.91259 1.25032 0.97826 0.98625 0.97923 1.70074 1.19394 1.27314 1.38300 0.86223 0.78802 0.83882 0.77432 1.21372 1.21706 1.20413 1.20841 0.96906 0.89266 0.91549 1.22559 0.95699 0.82505 1.02552 1.46030 1.57076 1.25133 1.07746 1.16612 0.78982 0.81620 0.84873 1.90887 1.55050 1.63002 1.31238 1.22347 1.07647 0.97083 0.85108 1.21978 0.98892 0.94281 0.99789 1.21853 1.06736 1.01059 0.94853 1.24386 0.98532 0.89140 0.96240 1.84076 1.56997 1.30139 1.34641 0.94820 0.93898 0.98217 0.93670 0.93936 0.92792 0.91120 0.91790 0.76365 0.82300 0.82730 0.77455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.98 59.85 0.54 4.50 16 2 N -0.60 -15.01 2.92 -181.12 -0.53 -15.53 16 3 C -0.26 -7.20 9.65 -15.06 -0.15 -7.34 16 4 H 0.07 1.87 7.86 -52.49 -0.41 1.46 16 5 C 0.00 0.13 5.10 -17.43 -0.09 0.04 16 6 N -0.91 -26.45 10.71 55.49 0.59 -25.85 16 7 Si 0.91 21.98 29.57 -169.99 -5.03 16.95 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.14 2.85 5.76 -4.05 -0.02 2.82 16 12 C 0.09 1.71 6.00 -4.05 -0.02 1.69 16 13 N -0.71 -10.95 5.55 -61.63 -0.34 -11.29 16 14 C 0.59 9.72 7.79 -12.86 -0.10 9.62 16 15 O -0.52 -10.34 16.86 5.19 0.09 -10.25 16 16 C -0.07 -0.94 7.13 -36.80 -0.26 -1.20 16 17 C -0.13 -1.52 10.62 -39.39 -0.42 -1.94 16 18 C -0.23 -2.01 10.88 -39.89 -0.43 -2.44 16 19 C -0.01 -0.11 12.08 29.63 0.36 0.25 16 20 O -0.16 -1.86 10.40 5.00 0.05 -1.81 16 21 H 0.03 0.89 7.34 -51.93 -0.38 0.51 16 22 H 0.04 1.14 7.34 -51.93 -0.38 0.76 16 23 H 0.00 -0.02 8.03 -51.93 -0.42 -0.43 16 24 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 26 H 0.05 1.05 8.04 -51.92 -0.42 0.63 16 27 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.40 5.15 8.23 -40.82 -0.34 4.81 16 30 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 285.00 15.07 4.29 4.29 Total: -1.00 -32.46 285.00 -5.48 -37.95 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.01 Total: -0.44 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.60 Total: 5.99 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.28 Total: -52.68 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.14 Total: -12.06 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.46 -5.48 -37.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663131824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.537 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds