Wall clock time and date at job start Sun Mar 29 2020 22:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36933 * 120.00059 * 2 1 4 4 H 1.08002 * 120.00141 * 200.35878 * 3 2 1 5 5 C 1.38808 * 120.00169 * 20.36038 * 3 2 1 6 6 N 1.31621 * 120.00117 * 14.98664 * 5 3 2 7 7 Si 1.86798 * 120.00306 * 194.98729 * 5 3 2 8 8 H 1.48508 * 109.47168 * 85.00187 * 7 5 3 9 9 H 1.48504 * 109.47201 * 204.99939 * 7 5 3 10 10 H 1.48496 * 109.47264 * 325.00402 * 7 5 3 11 11 C 1.46499 * 119.99873 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.47497 * 270.00102 * 11 2 1 13 13 N 1.46499 * 109.47497 * 180.02562 * 12 11 2 14 14 C 1.34775 * 120.00120 * 179.97438 * 13 12 11 15 15 O 1.21616 * 120.00084 * 0.02562 * 14 13 12 16 16 C 1.47371 * 119.99868 * 179.97438 * 14 13 12 17 17 C 1.47028 * 127.19252 * 180.28542 * 16 14 13 18 18 C 1.34172 * 105.95283 * 180.17626 * 17 16 14 19 19 O 1.34214 * 109.12732 * 359.60617 * 18 17 16 20 20 C 1.33651 * 110.90715 * 0.26341 * 19 18 17 21 21 H 1.08996 * 109.47088 * 275.09575 * 1 2 3 22 22 H 1.09001 * 109.46715 * 35.10005 * 1 2 3 23 23 H 1.09001 * 109.46982 * 155.09670 * 1 2 3 24 24 H 0.96995 * 120.00552 * 179.97438 * 6 5 3 25 25 H 1.08998 * 109.47016 * 150.00457 * 11 2 1 26 26 H 1.08998 * 109.47508 * 30.00603 * 11 2 1 27 27 H 1.08998 * 109.46697 * 60.00160 * 12 11 2 28 28 H 1.08998 * 109.47151 * 300.00720 * 12 11 2 29 29 H 0.97004 * 119.99555 * 0.02562 * 13 12 11 30 30 H 1.08000 * 127.01966 * 0.08183 * 17 16 14 31 31 H 1.08004 * 125.43612 * 179.86719 * 18 17 16 32 32 H 1.08004 * 125.79880 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2151 -0.3254 5 6 1.5207 2.3505 0.4182 6 7 0.3875 2.2836 1.0844 7 14 2.2825 4.0126 0.0356 8 1 1.8683 4.4460 -1.3231 9 1 1.8222 5.0099 1.0350 10 1 3.7624 3.9033 0.0906 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7099 1.4433 13 7 3.1855 -2.9783 1.4439 14 6 3.5230 -3.5611 2.6113 15 8 3.2186 -3.0343 3.6643 16 6 4.2598 -4.8374 2.6118 17 6 4.6997 -5.6092 3.7833 18 6 5.3303 -6.6893 3.2977 19 8 5.3053 -6.6472 1.9565 20 6 4.6722 -5.5520 1.5254 21 1 -0.3633 0.0913 1.0236 22 1 -0.3633 0.8408 -0.5909 23 1 -0.3633 -0.9321 -0.4327 24 1 -0.0518 3.0974 1.3770 25 1 3.1499 -1.1386 -0.5132 26 1 1.6085 -2.0286 -0.5130 27 1 1.5001 -1.8400 1.9571 28 1 3.0415 -0.9500 1.9568 29 1 3.4286 -3.3983 0.6039 30 1 4.5477 -5.3572 4.8225 31 1 5.7820 -7.4704 3.8914 32 1 4.5143 -5.2789 0.4925 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663141889.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:04 Heat of formation + Delta-G solvation = 3.626733 kcal Electronic energy + Delta-G solvation = -16234.023185 eV Core-core repulsion = 13390.437578 eV Total energy + Delta-G solvation = -2843.585607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.63767 -39.07051 -36.03783 -34.14697 -32.92475 -31.35998 -30.06005 -27.95777 -25.87994 -24.16890 -22.49602 -21.56492 -20.65158 -19.88973 -18.38305 -16.76790 -16.26631 -16.09328 -15.45063 -14.86309 -14.78625 -14.70758 -13.63582 -13.44509 -13.12082 -13.03125 -12.51215 -12.36707 -12.28256 -11.23239 -10.88832 -10.85294 -10.60123 -10.30562 -9.99955 -9.93660 -9.89692 -9.72943 -8.98216 -8.63670 -8.55355 -6.85580 -5.75059 -3.20417 1.29019 1.98606 2.77481 3.37641 3.42799 3.46148 3.48220 3.55150 4.45793 4.50613 4.62524 5.01276 5.38425 5.41791 5.54004 5.62178 5.75374 5.86382 5.98119 6.15999 6.25996 6.66584 6.70171 6.72321 6.79783 6.96949 7.34527 7.70040 7.79625 7.80269 8.35008 8.50560 9.19719 9.82548 10.29778 11.30138 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.046441 B = 0.004403 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.776749 B = 6357.191091 C = 6423.618364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.596 5.596 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.720 5.720 14 C 0.576 3.424 15 O -0.538 6.538 16 C -0.227 4.227 17 C -0.166 4.166 18 C -0.046 4.046 19 O -0.177 6.177 20 C 0.014 3.986 21 H 0.031 0.969 22 H 0.046 0.954 23 H -0.001 1.001 24 H 0.254 0.746 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.392 0.608 30 H 0.159 0.841 31 H 0.207 0.793 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.873 -17.041 -0.606 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.318 5.318 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.015 3.985 12 C -0.031 4.031 13 N -0.371 5.371 14 C 0.362 3.638 15 O -0.416 6.416 16 C -0.231 4.231 17 C -0.185 4.185 18 C -0.111 4.111 19 O -0.073 6.073 20 C -0.056 4.056 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.018 0.982 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.225 0.775 30 H 0.176 0.824 31 H 0.224 0.776 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 7.620 -16.675 0.026 18.333 hybrid contribution 0.365 0.914 -0.206 1.006 sum 7.985 -15.760 -0.180 17.669 Atomic orbital electron populations 1.20854 0.82127 0.95691 0.99677 1.43957 1.02087 1.00358 1.85439 1.19228 0.97194 0.84799 1.37926 0.91096 1.25008 0.97816 0.98540 0.98151 1.70086 1.18763 1.27026 1.39016 0.86240 0.78684 0.83809 0.77599 1.21386 1.21687 1.20500 1.20997 0.96396 0.88949 0.92125 1.22575 0.95750 0.82518 1.02242 1.46054 1.58320 1.25464 1.07292 1.17341 0.78946 0.83109 0.84364 1.90799 1.54837 1.64650 1.31277 1.21744 1.08427 0.99148 0.93830 1.22831 1.01397 0.94605 0.99706 1.23913 1.05297 1.01690 0.80248 1.83774 1.60589 1.39605 1.23296 1.24458 0.96075 0.85663 0.99434 0.95094 0.93572 0.98210 0.93595 0.93265 0.93915 0.92032 0.91170 0.77502 0.82378 0.77600 0.77189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 9.02 59.85 0.54 4.50 16 2 N -0.60 -14.87 2.93 -181.12 -0.53 -15.40 16 3 C -0.26 -7.18 9.68 -15.06 -0.15 -7.33 16 4 H 0.07 1.89 7.86 -52.49 -0.41 1.47 16 5 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 6 N -0.90 -26.58 10.67 55.49 0.59 -25.99 16 7 Si 0.91 21.93 29.58 -169.99 -5.03 16.91 16 8 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 C 0.14 2.81 5.82 -4.04 -0.02 2.79 16 12 C 0.09 1.86 6.00 -4.04 -0.02 1.84 16 13 N -0.72 -11.06 5.55 -61.40 -0.34 -11.40 16 14 C 0.58 9.81 7.81 -12.54 -0.10 9.71 16 15 O -0.54 -11.69 16.98 5.26 0.09 -11.60 16 16 C -0.23 -3.00 6.31 -103.28 -0.65 -3.65 16 17 C -0.17 -1.94 11.01 -37.45 -0.41 -2.35 16 18 C -0.05 -0.40 12.03 29.30 0.35 -0.05 16 19 O -0.18 -1.71 10.52 7.66 0.08 -1.63 16 20 C 0.01 0.13 11.61 30.08 0.35 0.48 16 21 H 0.03 0.83 7.40 -51.93 -0.38 0.44 16 22 H 0.05 1.21 7.21 -51.93 -0.37 0.84 16 23 H 0.00 -0.01 7.84 -51.93 -0.41 -0.42 16 24 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 26 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.39 4.38 7.44 -40.82 -0.30 4.08 16 30 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.21 0.95 8.06 -52.48 -0.42 0.52 16 32 H 0.21 1.19 7.47 -52.48 -0.39 0.80 16 LS Contribution 283.73 15.07 4.28 4.28 Total: -1.00 -34.40 283.73 -4.99 -39.39 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -3.93 Total: -0.49 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -0.20 Total: 5.95 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.28 Total: -52.80 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.17 Total: -13.23 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.40 -4.99 -39.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663141889.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.017 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds