Wall clock time and date at job start Sun Mar 29 2020 22:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99923 * 2 1 4 4 C 1.50698 * 109.46788 * 66.04827 * 3 2 1 5 5 H 1.07997 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99790 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99711 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00205 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47306 * 59.99787 * 8 6 4 10 10 H 1.48499 * 109.47209 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47123 * 299.99938 * 8 6 4 12 12 C 1.46899 * 111.00002 * 236.04448 * 2 1 3 13 13 C 1.50688 * 109.47274 * 288.25431 * 12 2 1 14 14 C 1.38149 * 120.03005 * 105.47743 * 13 12 2 15 15 C 1.38435 * 120.05281 * 179.97438 * 14 13 12 16 16 F 1.35103 * 119.94875 * 179.97438 * 15 14 13 17 17 C 1.38481 * 120.10050 * 0.02562 * 15 14 13 18 18 C 1.38101 * 120.04983 * 359.97438 * 17 15 14 19 19 C 1.38862 * 120.02409 * 285.20119 * 13 12 2 20 20 N 1.39813 * 120.04911 * 0.02562 * 19 13 12 21 21 H 1.08990 * 109.47448 * 188.84008 * 1 2 3 22 22 H 1.09002 * 109.47111 * 308.84303 * 1 2 3 23 23 H 1.09006 * 109.47134 * 68.83488 * 1 2 3 24 24 H 1.08997 * 109.46449 * 186.04069 * 3 2 1 25 25 H 1.08995 * 109.47018 * 306.04231 * 3 2 1 26 26 H 0.97003 * 119.99762 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47035 * 48.25446 * 12 2 1 28 28 H 1.08998 * 109.46829 * 168.25302 * 12 2 1 29 29 H 1.08007 * 119.96710 * 359.95620 * 14 13 12 30 30 H 1.08001 * 119.97580 * 179.97438 * 17 15 14 31 31 H 1.08002 * 120.02580 * 180.02562 * 18 17 15 32 32 H 0.97002 * 120.00355 * 354.90272 * 20 19 13 33 33 H 0.97003 * 120.00389 * 174.90111 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3495 1.5285 7 7 2.7119 4.0019 0.6150 8 14 1.5818 4.1872 3.1377 9 1 2.1735 3.4303 4.2700 10 1 2.1140 5.5736 3.1378 11 1 0.1046 4.2236 3.2849 12 6 1.9954 -0.7660 -1.1376 13 6 1.7600 -2.2361 -0.9052 14 6 0.7690 -2.8967 -1.6053 15 6 0.5526 -4.2474 -1.3926 16 9 -0.4175 -4.8912 -2.0780 17 6 1.3283 -4.9394 -0.4777 18 6 2.3202 -4.2832 0.2244 19 6 2.5428 -2.9293 0.0085 20 7 3.5499 -2.2641 0.7143 21 1 -0.3634 -1.0153 0.1579 22 1 -0.3633 0.6446 0.8004 23 1 -0.3634 0.3711 -0.9584 24 1 3.0797 1.3444 -0.1081 25 1 1.5611 1.9273 -0.8309 26 1 2.9864 4.9180 0.7770 27 1 1.4868 -0.4564 -2.0506 28 1 3.0649 -0.5805 -1.2366 29 1 0.1624 -2.3587 -2.3188 30 1 1.1576 -5.9930 -0.3130 31 1 2.9252 -4.8234 0.9376 32 1 3.7516 -1.3368 0.5134 33 1 4.0468 -2.7298 1.4051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035308467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:59 Heat of formation + Delta-G solvation = -20.696363 kcal Electronic energy + Delta-G solvation = -16626.930449 eV Core-core repulsion = 13794.662903 eV Total energy + Delta-G solvation = -2832.267546 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.48012 -39.35619 -36.30110 -33.94996 -32.73520 -31.22528 -28.22614 -27.13807 -26.50505 -23.91230 -22.34901 -21.30509 -20.06367 -17.12886 -17.02414 -16.62804 -16.21293 -15.29923 -14.94596 -14.77454 -14.24925 -14.04745 -13.93364 -13.40878 -12.73921 -12.67859 -12.50764 -12.15648 -11.93394 -11.40525 -11.04323 -10.87333 -10.85643 -10.64499 -10.44436 -10.11202 -9.88624 -9.28994 -8.74766 -8.47818 -7.31509 -7.12532 -6.07152 -4.08684 1.45265 1.66193 3.30534 3.34843 3.37745 3.87754 4.20664 4.39580 4.61691 4.89549 5.00713 5.18237 5.29137 5.33822 5.58831 5.80570 5.89961 6.05720 6.18382 6.24581 6.33988 6.36509 6.42967 6.64049 6.77777 7.07038 7.20498 7.30029 7.74143 7.77155 8.00021 8.11110 8.15113 8.49081 8.99106 9.55829 11.03446 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039622 B = 0.005473 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.516842 B = 5114.538950 C = 5327.827789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.533 5.533 3 C 0.191 3.809 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.095 3.905 13 C -0.118 4.118 14 C -0.099 4.099 15 C 0.023 3.977 16 F -0.153 7.153 17 C -0.108 4.108 18 C -0.183 4.183 19 C 0.238 3.762 20 N -0.861 5.861 21 H 0.046 0.954 22 H 0.075 0.925 23 H 0.010 0.990 24 H 0.028 0.972 25 H -0.009 1.009 26 H 0.262 0.738 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.409 0.591 33 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -14.111 -2.334 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.257 5.257 3 C 0.066 3.934 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.034 4.034 13 C -0.123 4.123 14 C -0.119 4.119 15 C 0.001 3.999 16 F -0.132 7.132 17 C -0.128 4.128 18 C -0.207 4.207 19 C 0.130 3.870 20 N -0.398 5.398 21 H 0.065 0.935 22 H 0.093 0.907 23 H 0.028 0.972 24 H 0.046 0.954 25 H 0.009 0.991 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.240 0.760 33 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.124 -14.142 -1.974 14.280 hybrid contribution -0.425 1.023 0.192 1.124 sum -0.301 -13.119 -1.782 13.243 Atomic orbital electron populations 1.22218 0.88625 1.00188 1.00022 1.62154 1.07327 1.17328 1.38925 1.19765 0.95176 0.81667 0.96747 1.21106 1.34927 0.96902 1.01659 0.91903 1.24983 0.95288 0.97317 0.96961 1.69947 1.38292 1.11524 1.34067 0.86559 0.78746 0.78337 0.83752 1.20214 1.21369 1.20287 1.20877 1.00178 0.88859 0.93455 1.19277 0.97554 0.96039 0.99435 1.20785 0.98192 0.92491 1.00472 1.17329 0.92562 0.91176 0.98784 1.91424 1.61336 1.81819 1.78656 1.20724 0.95907 0.99904 0.96251 1.20348 1.02409 0.92902 1.05007 1.17595 0.88275 0.90637 0.90502 1.42585 1.38890 1.16338 1.42009 0.93500 0.90656 0.97158 0.95365 0.99098 0.92851 0.94674 0.90851 0.85470 0.85549 0.85704 0.75958 0.77900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.24 60.06 0.56 1.31 16 2 N -0.53 -10.97 4.62 -245.83 -1.14 -12.10 16 3 C 0.19 4.77 4.71 -4.97 -0.02 4.74 16 4 C -0.51 -13.81 8.39 -34.44 -0.29 -14.10 16 5 H 0.06 1.71 7.17 -52.49 -0.38 1.33 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.09 1.65 4.33 -4.98 -0.02 1.62 16 13 C -0.12 -1.85 4.68 -104.43 -0.49 -2.34 16 14 C -0.10 -1.49 9.38 -39.54 -0.37 -1.86 16 15 C 0.02 0.33 7.30 -39.42 -0.29 0.04 16 16 F -0.15 -2.28 17.26 2.25 0.04 -2.24 16 17 C -0.11 -1.39 10.02 -39.54 -0.40 -1.79 16 18 C -0.18 -2.33 9.90 -39.39 -0.39 -2.72 16 19 C 0.24 3.45 6.74 -83.74 -0.56 2.88 16 20 N -0.86 -11.49 9.01 32.43 0.29 -11.20 16 21 H 0.05 0.85 7.40 -51.93 -0.38 0.46 16 22 H 0.07 1.60 6.66 -51.93 -0.35 1.25 16 23 H 0.01 0.19 8.02 -51.93 -0.42 -0.23 16 24 H 0.03 0.73 7.86 -51.93 -0.41 0.32 16 25 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.04 0.60 7.77 -51.93 -0.40 0.20 16 28 H 0.07 1.24 6.97 -51.93 -0.36 0.88 16 29 H 0.13 1.79 8.00 -52.48 -0.42 1.37 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.41 6.10 7.09 -40.82 -0.29 5.81 16 33 H 0.39 4.20 8.85 -40.82 -0.36 3.83 16 LS Contribution 283.54 15.07 4.27 4.27 Total: -1.00 -29.06 283.54 -7.36 -36.42 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.17 Total: 4.70 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.37 Total: -10.76 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.11 Total: -48.65 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.06 -7.36 -36.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035308467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.726 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds