Wall clock time and date at job start Sun Mar 29 2020 22:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99923 * 2 1 4 4 C 1.50698 * 109.46788 * 66.04827 * 3 2 1 5 5 H 1.07997 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99790 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99711 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00205 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47306 * 59.99787 * 8 6 4 10 10 H 1.48499 * 109.47209 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47123 * 299.99938 * 8 6 4 12 12 C 1.46899 * 111.00002 * 236.04448 * 2 1 3 13 13 C 1.50688 * 109.47274 * 288.25431 * 12 2 1 14 14 C 1.38149 * 120.03005 * 105.47743 * 13 12 2 15 15 C 1.38435 * 120.05281 * 179.97438 * 14 13 12 16 16 F 1.35103 * 119.94875 * 179.97438 * 15 14 13 17 17 C 1.38481 * 120.10050 * 0.02562 * 15 14 13 18 18 C 1.38101 * 120.04983 * 359.97438 * 17 15 14 19 19 C 1.38862 * 120.02409 * 285.20119 * 13 12 2 20 20 N 1.39813 * 120.04911 * 0.02562 * 19 13 12 21 21 H 1.08990 * 109.47448 * 188.84008 * 1 2 3 22 22 H 1.09002 * 109.47111 * 308.84303 * 1 2 3 23 23 H 1.09006 * 109.47134 * 68.83488 * 1 2 3 24 24 H 1.08997 * 109.46449 * 186.04069 * 3 2 1 25 25 H 1.08995 * 109.47018 * 306.04231 * 3 2 1 26 26 H 0.97003 * 119.99762 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47035 * 48.25446 * 12 2 1 28 28 H 1.08998 * 109.46829 * 168.25302 * 12 2 1 29 29 H 1.08007 * 119.96710 * 359.95620 * 14 13 12 30 30 H 1.08001 * 119.97580 * 179.97438 * 17 15 14 31 31 H 1.08002 * 120.02580 * 180.02562 * 18 17 15 32 32 H 0.97002 * 120.00355 * 354.90272 * 20 19 13 33 33 H 0.97003 * 120.00389 * 174.90111 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3495 1.5285 7 7 2.7119 4.0019 0.6150 8 14 1.5818 4.1872 3.1377 9 1 2.1735 3.4303 4.2700 10 1 2.1140 5.5736 3.1378 11 1 0.1046 4.2236 3.2849 12 6 1.9954 -0.7660 -1.1376 13 6 1.7600 -2.2361 -0.9052 14 6 0.7690 -2.8967 -1.6053 15 6 0.5526 -4.2474 -1.3926 16 9 -0.4175 -4.8912 -2.0780 17 6 1.3283 -4.9394 -0.4777 18 6 2.3202 -4.2832 0.2244 19 6 2.5428 -2.9293 0.0085 20 7 3.5499 -2.2641 0.7143 21 1 -0.3634 -1.0153 0.1579 22 1 -0.3633 0.6446 0.8004 23 1 -0.3634 0.3711 -0.9584 24 1 3.0797 1.3444 -0.1081 25 1 1.5611 1.9273 -0.8309 26 1 2.9864 4.9180 0.7770 27 1 1.4868 -0.4564 -2.0506 28 1 3.0649 -0.5805 -1.2366 29 1 0.1624 -2.3587 -2.3188 30 1 1.1576 -5.9930 -0.3130 31 1 2.9252 -4.8234 0.9376 32 1 3.7516 -1.3368 0.5134 33 1 4.0468 -2.7298 1.4051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035308467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:59 Heat of formation + Delta-G solvation = -39.666208 kcal Electronic energy + Delta-G solvation = -16627.753043 eV Core-core repulsion = 13794.662903 eV Total energy + Delta-G solvation = -2833.090141 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.60057 -40.52189 -37.90696 -35.04580 -34.71889 -32.55451 -29.54224 -28.91843 -27.90937 -25.64809 -23.48173 -22.82805 -21.52635 -18.58050 -18.24243 -17.97524 -17.63034 -16.82668 -16.38272 -15.93562 -15.87009 -15.67805 -15.30465 -14.72977 -14.01945 -13.95490 -13.85422 -13.64312 -13.39751 -13.18031 -12.84365 -12.57663 -12.43944 -12.31521 -11.98122 -11.70846 -11.26553 -11.19779 -10.60027 -9.86094 -9.02313 -8.25172 -8.17275 -6.28267 0.36147 0.55825 1.42661 1.44469 1.52570 2.41050 2.75887 3.13843 3.14686 3.39055 3.62418 3.86882 3.91829 4.24117 4.40799 4.49460 4.57825 4.67400 4.74427 4.98889 5.03886 5.08055 5.20662 5.24497 5.32748 5.37706 5.51292 5.66271 5.98952 6.05761 6.31265 6.60863 6.67311 6.87591 7.08234 7.41273 8.91443 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039622 B = 0.005473 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.516842 B = 5114.538950 C = 5327.827789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.531 5.531 3 C 0.206 3.794 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.005 3.995 7 N -0.933 5.933 8 Si 0.965 3.035 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.099 3.901 13 C -0.138 4.138 14 C -0.104 4.104 15 C 0.008 3.992 16 F -0.157 7.157 17 C -0.099 4.099 18 C -0.176 4.176 19 C 0.229 3.771 20 N -0.858 5.858 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.012 0.988 24 H 0.012 0.988 25 H -0.040 1.040 26 H 0.264 0.736 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.401 0.599 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.215 -15.694 -1.094 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.255 5.255 3 C 0.080 3.920 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.193 4.193 7 N -0.574 5.574 8 Si 0.790 3.210 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.196 1.196 12 C -0.028 4.028 13 C -0.143 4.143 14 C -0.124 4.124 15 C -0.014 4.014 16 F -0.136 7.136 17 C -0.118 4.118 18 C -0.199 4.199 19 C 0.121 3.879 20 N -0.396 5.396 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.030 0.970 24 H 0.030 0.970 25 H -0.022 1.022 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.146 0.854 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.230 0.770 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.004 -15.762 -0.726 15.779 hybrid contribution -0.375 1.426 -0.238 1.494 sum -0.379 -14.336 -0.964 14.373 Atomic orbital electron populations 1.22157 0.88030 1.00886 0.99409 1.62081 1.07834 1.14809 1.40809 1.19431 0.94016 0.83673 0.94847 1.21397 1.34733 0.97387 1.02321 0.92088 1.25836 0.95095 0.98030 1.00388 1.70069 1.39356 1.11884 1.36058 0.85496 0.78655 0.77229 0.79581 1.19317 1.20997 1.19623 1.20829 0.99930 0.89929 0.92148 1.19072 0.99169 0.94763 1.01344 1.20820 0.98042 0.93032 1.00474 1.17496 0.93128 0.91147 0.99587 1.91414 1.61580 1.81780 1.78874 1.21069 0.94756 1.01198 0.94795 1.20670 1.02217 0.92058 1.04929 1.17813 0.88243 0.91556 0.90305 1.42590 1.38771 1.15951 1.42244 0.91562 0.92444 0.96990 0.96958 1.02213 0.92744 0.94832 0.90917 0.85364 0.82743 0.82659 0.76968 0.76362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.72 9.24 127.69 1.18 2.90 16 2 N -0.53 -22.04 4.62 -931.68 -4.31 -26.35 16 3 C 0.21 10.57 4.71 85.55 0.40 10.97 16 4 C -0.52 -28.61 8.39 25.60 0.21 -28.40 16 5 H 0.06 3.32 7.17 -2.91 -0.02 3.30 16 6 C 0.00 0.26 5.46 84.65 0.46 0.72 16 7 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 8 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 C 0.10 3.48 4.33 85.55 0.37 3.85 16 13 C -0.14 -4.20 4.68 -19.74 -0.09 -4.30 16 14 C -0.10 -2.99 9.38 22.30 0.21 -2.78 16 15 C 0.01 0.20 7.30 22.37 0.16 0.37 16 16 F -0.16 -4.41 17.26 44.97 0.78 -3.63 16 17 C -0.10 -2.22 10.02 22.30 0.22 -2.00 16 18 C -0.18 -3.89 9.90 22.40 0.22 -3.67 16 19 C 0.23 6.21 6.74 38.18 0.26 6.47 16 20 N -0.86 -21.66 9.01 -51.32 -0.46 -22.12 16 21 H 0.07 2.33 7.40 -2.39 -0.02 2.32 16 22 H 0.06 2.44 6.66 -2.39 -0.02 2.43 16 23 H 0.01 0.45 8.02 -2.38 -0.02 0.43 16 24 H 0.01 0.66 7.86 -2.39 -0.02 0.64 16 25 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 26 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.03 1.17 7.77 -2.39 -0.02 1.15 16 28 H 0.07 2.51 6.97 -2.39 -0.02 2.50 16 29 H 0.13 3.55 8.00 -2.91 -0.02 3.53 16 30 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.40 11.76 7.09 -92.71 -0.66 11.10 16 33 H 0.41 7.82 8.85 -92.71 -0.82 7.00 16 Total: -1.00 -61.58 283.54 1.58 -60.00 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.34 Total: 17.08 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 3.61 Total: -15.86 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -4.49 Total: -103.11 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.78 Total: -3.63 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -61.58 1.58 -60.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035308467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.332 kcal (2) G-P(sol) polarization free energy of solvation -61.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds