Wall clock time and date at job start Sun Mar 29 2020 22:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86797 * 119.99739 * 2 1 4 4 H 1.48503 * 109.47199 * 264.77306 * 3 2 1 5 5 H 1.48498 * 109.47489 * 24.77926 * 3 2 1 6 6 H 1.48510 * 109.47228 * 144.77797 * 3 2 1 7 7 C 1.40050 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99986 * 350.58697 * 7 2 1 9 9 C 1.46375 * 120.00019 * 170.58037 * 7 2 1 10 10 O 1.21681 * 120.00277 * 342.98111 * 9 7 2 11 11 N 1.34780 * 119.99516 * 162.97801 * 9 7 2 12 12 C 1.47079 * 120.88551 * 354.73999 * 11 9 7 13 13 C 1.53231 * 108.52227 * 231.16312 * 12 11 9 14 14 N 1.46903 * 109.34186 * 306.17218 * 13 12 11 15 15 C 1.46900 * 111.00004 * 187.25523 * 14 13 12 16 16 C 1.53001 * 109.46905 * 169.99739 * 15 14 13 17 17 C 1.53000 * 117.49711 * 174.99575 * 16 15 14 18 18 C 1.53004 * 117.50261 * 243.62062 * 16 15 14 19 19 C 1.46895 * 111.26955 * 63.10061 * 14 13 12 20 20 C 1.47083 * 120.87672 * 174.71813 * 11 9 7 21 21 H 0.97001 * 120.00221 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.62514 * 111.45462 * 12 11 9 23 23 H 1.08996 * 109.62576 * 350.87797 * 12 11 9 24 24 H 1.09001 * 109.49462 * 186.21402 * 13 12 11 25 25 H 1.08997 * 109.51911 * 66.14643 * 13 12 11 26 26 H 1.09004 * 109.47323 * 50.00084 * 15 14 13 27 27 H 1.08996 * 109.46925 * 289.99591 * 15 14 13 28 28 H 1.09006 * 115.56334 * 29.31018 * 16 15 14 29 29 H 1.08990 * 117.50118 * 0.02562 * 17 16 15 30 30 H 1.09003 * 117.49863 * 214.97490 * 17 16 15 31 31 H 1.08989 * 117.50309 * 145.02191 * 18 16 15 32 32 H 1.09002 * 117.51164 * 359.97438 * 18 16 15 33 33 H 1.09007 * 109.49073 * 56.86253 * 19 14 13 34 34 H 1.08999 * 109.49443 * 176.93778 * 19 14 13 35 35 H 1.08998 * 109.63131 * 248.54778 * 20 11 9 36 36 H 1.09004 * 109.63100 * 9.13206 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5986 1.9827 -1.3943 5 1 1.3873 2.6820 0.5868 6 1 3.4787 1.4746 0.8075 7 6 2.0070 -1.2128 0.0005 8 1 1.4780 -2.1418 0.1539 9 6 3.4560 -1.2214 -0.2069 10 8 4.0086 -0.2462 -0.6803 11 7 4.1779 -2.3096 0.1265 12 6 3.5499 -3.4536 0.8048 13 6 4.3808 -3.8004 2.0447 14 7 5.7812 -4.0043 1.6505 15 6 6.5779 -4.5057 2.7783 16 6 7.9561 -4.9403 2.2757 17 6 8.9810 -5.3854 3.3208 18 6 8.3216 -6.4202 2.4068 19 6 6.3644 -2.7736 1.0999 20 6 5.6148 -2.3847 -0.1788 21 1 -0.4850 0.8400 0.0004 22 1 3.5235 -4.3096 0.1305 23 1 2.5361 -3.1894 1.1055 24 1 3.9940 -4.7130 2.4982 25 1 4.3206 -2.9833 2.7636 26 1 6.0708 -5.3579 3.2309 27 1 6.6942 -3.7159 3.5205 28 1 8.3282 -4.4055 1.4018 29 1 8.6734 -5.3691 4.3663 30 1 10.0274 -5.1437 3.1344 31 1 8.9340 -6.8591 1.6193 32 1 7.5804 -7.0844 2.8515 33 1 6.2766 -1.9704 1.8316 34 1 7.4161 -2.9416 0.8681 35 1 5.7869 -3.1380 -0.9476 36 1 5.9662 -1.4138 -0.5283 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048995710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:04 Heat of formation + Delta-G solvation = -9.558025 kcal Electronic energy + Delta-G solvation = -17260.601272 eV Core-core repulsion = 14552.277025 eV Total energy + Delta-G solvation = -2708.324247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.22273 -37.75978 -36.30369 -33.36563 -32.83367 -30.78661 -28.28657 -26.47246 -24.36291 -23.21426 -22.49243 -20.95710 -20.21970 -18.83572 -16.86063 -16.29440 -15.66503 -15.10372 -14.93952 -14.60457 -14.21950 -14.07455 -13.76864 -13.49679 -12.73738 -12.34771 -12.07886 -11.93469 -11.73096 -11.62625 -11.42667 -11.00296 -10.82898 -10.67698 -10.63491 -10.37053 -10.31623 -10.03106 -9.47373 -9.01234 -8.22065 -7.93102 -7.47548 -6.62029 -4.82416 3.44469 3.48096 3.61715 3.70340 4.01255 4.18532 4.30270 4.55510 4.63259 4.81841 4.91096 5.25531 5.30305 5.41100 5.45220 5.47249 5.49066 5.60720 5.73979 5.75476 5.80114 5.82570 5.97201 5.98968 6.11381 6.23215 6.35854 6.42812 6.59341 7.04964 7.22783 7.26373 7.65010 7.88605 8.33367 8.72982 9.15512 10.04628 10.39283 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049705 B = 0.005595 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.185029 B = 5003.556711 C = 5231.652078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.103 3.897 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.320 1.320 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.090 0.910 9 C 0.555 3.445 10 O -0.618 6.618 11 N -0.634 5.634 12 C 0.127 3.873 13 C 0.042 3.958 14 N -0.535 5.535 15 C 0.086 3.914 16 C -0.144 4.144 17 C -0.185 4.185 18 C -0.174 4.174 19 C 0.043 3.957 20 C 0.123 3.877 21 H 0.282 0.718 22 H 0.054 0.946 23 H 0.101 0.899 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.333 -10.345 6.611 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.115 4.115 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.251 1.251 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.108 0.892 9 C 0.365 3.635 10 O -0.510 6.510 11 N -0.369 5.369 12 C 0.003 3.997 13 C -0.087 4.087 14 N -0.259 5.259 15 C -0.042 4.042 16 C -0.162 4.162 17 C -0.223 4.223 18 C -0.211 4.211 19 C -0.086 4.086 20 C -0.001 4.001 21 H 0.092 0.908 22 H 0.073 0.927 23 H 0.119 0.881 24 H 0.095 0.905 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.052 0.948 28 H 0.126 0.874 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.403 -10.166 5.995 17.120 hybrid contribution 0.313 1.080 0.699 1.325 sum 12.716 -9.086 6.694 17.002 Atomic orbital electron populations 1.69560 1.07898 1.29937 1.38491 1.25725 0.94688 1.01908 0.89133 0.85288 0.77657 0.77691 0.79740 1.20235 1.25119 1.19397 1.20753 0.89030 0.95851 1.51329 0.89171 1.18359 0.88119 0.79927 0.77144 1.90207 1.73265 1.34550 1.52972 1.47774 1.07558 1.18593 1.62929 1.21556 0.97343 0.88769 0.92032 1.22552 0.88090 1.00116 0.97901 1.61926 1.02203 1.30461 1.31358 1.21647 0.91851 0.98978 0.91759 1.22317 0.95392 0.97668 1.00866 1.22966 0.98030 1.04793 0.96475 1.22970 1.03525 0.92192 1.02455 1.22548 0.98524 0.90086 0.97453 1.21319 0.82530 1.01483 0.94799 0.90825 0.92736 0.88138 0.90470 0.94515 0.90848 0.94766 0.87366 0.89018 0.88968 0.89049 0.88895 0.94744 0.90477 0.92787 0.89464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.61 13.92 55.55 0.77 -22.84 16 2 C 0.10 2.96 5.52 -17.37 -0.10 2.86 16 3 Si 0.96 25.64 25.84 -169.99 -4.39 21.25 16 4 H -0.28 -7.58 7.11 56.52 0.40 -7.18 16 5 H -0.32 -8.02 7.11 56.52 0.40 -7.62 16 6 H -0.27 -7.47 6.78 56.52 0.38 -7.09 16 7 C -0.53 -15.10 9.09 -35.63 -0.32 -15.43 16 8 H 0.09 2.52 6.47 -52.49 -0.34 2.18 16 9 C 0.56 15.03 7.24 -12.99 -0.09 14.94 16 10 O -0.62 -18.19 12.09 5.21 0.06 -18.12 16 11 N -0.63 -14.07 3.01 -174.13 -0.52 -14.59 16 12 C 0.13 2.36 6.42 -3.61 -0.02 2.34 16 13 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 14 N -0.53 -7.84 4.63 -234.33 -1.08 -8.92 16 15 C 0.09 1.03 5.24 -3.82 -0.02 1.01 16 16 C -0.14 -1.54 5.66 -90.62 -0.51 -2.05 16 17 C -0.19 -1.64 10.25 -26.73 -0.27 -1.92 16 18 C -0.17 -1.61 10.18 -26.73 -0.27 -1.89 16 19 C 0.04 0.67 5.47 -3.70 -0.02 0.65 16 20 C 0.12 2.33 6.61 -3.60 -0.02 2.30 16 21 H 0.28 7.38 8.29 -40.82 -0.34 7.05 16 22 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.10 1.99 5.72 -51.93 -0.30 1.69 16 24 H 0.08 1.01 7.99 -51.93 -0.41 0.59 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.81 7.70 -51.93 -0.40 0.41 16 27 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.11 1.22 6.33 -51.93 -0.33 0.89 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.79 8.14 -51.94 -0.42 0.36 16 32 H 0.09 0.82 8.03 -51.93 -0.42 0.41 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.03 6.12 -51.93 -0.32 0.71 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.79 7.04 -51.93 -0.37 1.42 16 LS Contribution 286.58 15.07 4.32 4.32 Total: -1.00 -31.59 286.58 -7.94 -39.53 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -5.41 Total: -4.07 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.68 Total: 3.45 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.84 Total: -46.35 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.06 Total: -18.12 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -4.39 Total: 21.25 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.59 -7.94 -39.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048995710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.968 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds