Wall clock time and date at job start Sun Mar 29 2020 22:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86797 * 119.99739 * 2 1 4 4 H 1.48503 * 109.47199 * 264.77306 * 3 2 1 5 5 H 1.48498 * 109.47489 * 24.77926 * 3 2 1 6 6 H 1.48510 * 109.47228 * 144.77797 * 3 2 1 7 7 C 1.40050 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99986 * 350.58697 * 7 2 1 9 9 C 1.46375 * 120.00019 * 170.58037 * 7 2 1 10 10 O 1.21681 * 120.00277 * 342.98111 * 9 7 2 11 11 N 1.34780 * 119.99516 * 162.97801 * 9 7 2 12 12 C 1.47079 * 120.88551 * 354.73999 * 11 9 7 13 13 C 1.53231 * 108.52227 * 231.16312 * 12 11 9 14 14 N 1.46903 * 109.34186 * 306.17218 * 13 12 11 15 15 C 1.46900 * 111.00004 * 187.25523 * 14 13 12 16 16 C 1.53001 * 109.46905 * 169.99739 * 15 14 13 17 17 C 1.53000 * 117.49711 * 174.99575 * 16 15 14 18 18 C 1.53004 * 117.50261 * 243.62062 * 16 15 14 19 19 C 1.46895 * 111.26955 * 63.10061 * 14 13 12 20 20 C 1.47083 * 120.87672 * 174.71813 * 11 9 7 21 21 H 0.97001 * 120.00221 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.62514 * 111.45462 * 12 11 9 23 23 H 1.08996 * 109.62576 * 350.87797 * 12 11 9 24 24 H 1.09001 * 109.49462 * 186.21402 * 13 12 11 25 25 H 1.08997 * 109.51911 * 66.14643 * 13 12 11 26 26 H 1.09004 * 109.47323 * 50.00084 * 15 14 13 27 27 H 1.08996 * 109.46925 * 289.99591 * 15 14 13 28 28 H 1.09006 * 115.56334 * 29.31018 * 16 15 14 29 29 H 1.08990 * 117.50118 * 0.02562 * 17 16 15 30 30 H 1.09003 * 117.49863 * 214.97490 * 17 16 15 31 31 H 1.08989 * 117.50309 * 145.02191 * 18 16 15 32 32 H 1.09002 * 117.51164 * 359.97438 * 18 16 15 33 33 H 1.09007 * 109.49073 * 56.86253 * 19 14 13 34 34 H 1.08999 * 109.49443 * 176.93778 * 19 14 13 35 35 H 1.08998 * 109.63131 * 248.54778 * 20 11 9 36 36 H 1.09004 * 109.63100 * 9.13206 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5986 1.9827 -1.3943 5 1 1.3873 2.6820 0.5868 6 1 3.4787 1.4746 0.8075 7 6 2.0070 -1.2128 0.0005 8 1 1.4780 -2.1418 0.1539 9 6 3.4560 -1.2214 -0.2069 10 8 4.0086 -0.2462 -0.6803 11 7 4.1779 -2.3096 0.1265 12 6 3.5499 -3.4536 0.8048 13 6 4.3808 -3.8004 2.0447 14 7 5.7812 -4.0043 1.6505 15 6 6.5779 -4.5057 2.7783 16 6 7.9561 -4.9403 2.2757 17 6 8.9810 -5.3854 3.3208 18 6 8.3216 -6.4202 2.4068 19 6 6.3644 -2.7736 1.0999 20 6 5.6148 -2.3847 -0.1788 21 1 -0.4850 0.8400 0.0004 22 1 3.5235 -4.3096 0.1305 23 1 2.5361 -3.1894 1.1055 24 1 3.9940 -4.7130 2.4982 25 1 4.3206 -2.9833 2.7636 26 1 6.0708 -5.3579 3.2309 27 1 6.6942 -3.7159 3.5205 28 1 8.3282 -4.4055 1.4018 29 1 8.6734 -5.3691 4.3663 30 1 10.0274 -5.1437 3.1344 31 1 8.9340 -6.8591 1.6193 32 1 7.5804 -7.0844 2.8515 33 1 6.2766 -1.9704 1.8316 34 1 7.4161 -2.9416 0.8681 35 1 5.7869 -3.1380 -0.9476 36 1 5.9662 -1.4138 -0.5283 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048995710.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:04 Heat of formation + Delta-G solvation = -31.233579 kcal Electronic energy + Delta-G solvation = -17261.541195 eV Core-core repulsion = 14552.277025 eV Total energy + Delta-G solvation = -2709.264169 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.73522 -39.16090 -37.60840 -35.04134 -34.90835 -32.23580 -29.77499 -28.33699 -25.65695 -24.67348 -23.16780 -22.53454 -21.20481 -20.52818 -18.71715 -18.08850 -17.10703 -16.65812 -16.13280 -16.01224 -15.80329 -15.66603 -15.07218 -14.60149 -14.55108 -14.18028 -13.97573 -13.40871 -13.18992 -12.94249 -12.69162 -12.49946 -12.31189 -12.23376 -12.07249 -11.91383 -11.49046 -11.22612 -11.12529 -10.82773 -10.05452 -9.54838 -9.15275 -8.81299 -7.01973 1.29623 1.33385 1.55119 2.05589 2.29588 2.56659 2.80582 3.11963 3.28102 3.77820 3.93011 4.05570 4.09981 4.19410 4.28308 4.34558 4.39393 4.48888 4.63343 4.72605 4.74247 4.81636 4.85169 4.88347 4.93312 5.09322 5.11233 5.16269 5.32266 5.35965 5.66770 5.91099 6.03432 6.08692 6.24010 6.61018 7.11799 7.94852 8.24635 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.049705 B = 0.005595 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.185029 B = 5003.556711 C = 5231.652078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.073 3.927 3 Si 1.007 2.993 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.550 3.450 10 O -0.648 6.648 11 N -0.635 5.635 12 C 0.123 3.877 13 C 0.050 3.950 14 N -0.535 5.535 15 C 0.089 3.911 16 C -0.160 4.160 17 C -0.175 4.175 18 C -0.170 4.170 19 C 0.054 3.946 20 C 0.119 3.881 21 H 0.292 0.708 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.022 0.978 26 H 0.087 0.913 27 H 0.031 0.969 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.017 0.983 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.607 -11.786 7.565 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.143 4.143 3 Si 0.839 3.161 4 H -0.219 1.219 5 H -0.223 1.223 6 H -0.218 1.218 7 C -0.587 4.587 8 H 0.103 0.897 9 C 0.357 3.643 10 O -0.543 6.543 11 N -0.368 5.368 12 C 0.000 4.000 13 C -0.078 4.078 14 N -0.260 5.260 15 C -0.039 4.039 16 C -0.179 4.179 17 C -0.212 4.212 18 C -0.207 4.207 19 C -0.075 4.075 20 C -0.004 4.004 21 H 0.103 0.897 22 H 0.087 0.913 23 H 0.102 0.898 24 H 0.128 0.872 25 H 0.040 0.960 26 H 0.105 0.895 27 H 0.049 0.951 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.035 0.965 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.671 -11.645 6.976 19.266 hybrid contribution -0.036 1.421 0.393 1.475 sum 13.635 -10.223 7.369 18.567 Atomic orbital electron populations 1.69553 1.08186 1.31082 1.39031 1.26181 0.95247 1.03540 0.89324 0.84693 0.76320 0.76696 0.78358 1.21859 1.22254 1.21798 1.20954 0.90066 0.95843 1.51867 0.89673 1.18326 0.88130 0.80867 0.76968 1.90177 1.73769 1.36065 1.54253 1.47786 1.08892 1.18173 1.61981 1.21711 0.97057 0.87739 0.93468 1.22456 0.88511 1.01067 0.95790 1.61936 1.01947 1.29354 1.32719 1.21697 0.92357 0.99150 0.90670 1.22241 0.95130 0.98918 1.01605 1.23041 0.98060 1.03678 0.96454 1.23048 1.03566 0.91467 1.02647 1.22408 0.99559 0.90189 0.95330 1.21497 0.80770 1.01045 0.97071 0.89732 0.91256 0.89828 0.87233 0.95988 0.89454 0.95112 0.88021 0.88355 0.88076 0.88454 0.88358 0.96494 0.87673 0.91204 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.20 13.92 21.84 0.30 -47.90 16 2 C 0.07 4.20 5.52 85.31 0.47 4.68 16 3 Si 1.01 53.19 25.84 68.60 1.77 54.96 16 4 H -0.29 -15.99 7.11 99.48 0.71 -15.28 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.29 -16.33 6.78 99.48 0.67 -15.66 16 7 C -0.55 -31.65 9.09 24.83 0.23 -31.42 16 8 H 0.09 4.86 6.47 -2.91 -0.02 4.84 16 9 C 0.55 30.17 7.24 86.36 0.63 30.80 16 10 O -0.65 -38.81 12.09 -4.29 -0.05 -38.86 16 11 N -0.64 -28.13 3.01 -823.04 -2.48 -30.61 16 12 C 0.12 4.48 6.42 86.35 0.55 5.03 16 13 C 0.05 1.46 5.62 86.38 0.49 1.95 16 14 N -0.53 -14.38 4.63 -895.28 -4.14 -18.53 16 15 C 0.09 1.87 5.24 86.30 0.45 2.32 16 16 C -0.16 -2.95 5.66 -10.79 -0.06 -3.01 16 17 C -0.17 -2.56 10.25 30.60 0.31 -2.24 16 18 C -0.17 -2.60 10.18 30.60 0.31 -2.29 16 19 C 0.05 1.61 5.47 86.38 0.47 2.08 16 20 C 0.12 4.44 6.61 86.35 0.57 5.01 16 21 H 0.29 15.15 8.29 -92.71 -0.77 14.38 16 22 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 23 H 0.08 3.32 5.72 -2.39 -0.01 3.31 16 24 H 0.11 2.51 7.99 -2.39 -0.02 2.49 16 25 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 1.62 7.70 -2.39 -0.02 1.60 16 27 H 0.03 0.68 8.12 -2.39 -0.02 0.66 16 28 H 0.10 2.01 6.33 -2.38 -0.02 1.99 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 1.40 8.03 -2.39 -0.02 1.38 16 33 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.11 2.57 6.12 -2.39 -0.01 2.56 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.07 2.76 7.04 -2.38 -0.02 2.74 16 Total: -1.00 -67.32 286.58 0.85 -66.46 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: 1.03 Total: 1.57 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 4.42 Total: 12.90 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -6.32 Total: -97.03 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.05 Total: -38.86 kcal Atomic # 14 Polarization: 53.19 SS G_CDS: 1.77 Total: 54.96 kcal Total: -67.32 0.85 -66.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048995710.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.230 kcal (2) G-P(sol) polarization free energy of solvation -67.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds