Wall clock time and date at job start Sun Mar 29 2020 23:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00439 * 2 1 4 4 H 1.48500 * 109.47433 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47071 * 300.00267 * 3 2 1 6 6 H 1.48501 * 109.47076 * 60.00228 * 3 2 1 7 7 C 1.37886 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99947 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46976 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00100 * 312.54925 * 10 9 7 12 12 C 1.50235 * 110.26809 * 186.93591 * 11 10 9 13 13 O 1.21284 * 118.62842 * 196.58914 * 12 11 10 14 14 N 1.33901 * 122.73828 * 16.58647 * 12 11 10 15 15 C 1.45728 * 122.45233 * 357.99803 * 14 12 11 16 16 H 1.08994 * 107.93809 * 261.53067 * 15 14 12 17 17 C 1.52436 * 110.95903 * 142.89781 * 15 14 12 18 18 C 1.52972 * 109.99852 * 295.22312 * 17 15 14 19 19 C 1.53078 * 109.11117 * 300.36896 * 18 17 15 20 20 C 1.52897 * 109.22815 * 60.99328 * 19 18 17 21 21 C 1.47567 * 111.00011 * 189.99872 * 10 9 7 22 22 H 1.08999 * 110.57083 * 313.07970 * 21 10 9 23 23 H 0.96996 * 119.99603 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46859 * 60.00077 * 9 7 2 25 25 H 1.09004 * 109.47487 * 300.00435 * 9 7 2 26 26 H 1.09004 * 109.33417 * 307.18151 * 11 10 9 27 27 H 1.08993 * 109.33553 * 66.84927 * 11 10 9 28 28 H 0.96991 * 118.77324 * 177.99713 * 14 12 11 29 29 H 1.09000 * 109.37777 * 55.38124 * 17 15 14 30 30 H 1.08993 * 109.38065 * 175.05719 * 17 15 14 31 31 H 1.08996 * 109.53062 * 60.26725 * 18 17 15 32 32 H 1.09006 * 109.52792 * 180.41008 * 18 17 15 33 33 H 1.09001 * 109.51098 * 180.91913 * 19 18 17 34 34 H 1.08990 * 109.51323 * 301.06820 * 19 18 17 35 35 H 1.09007 * 109.41100 * 59.42254 * 20 19 18 36 36 H 1.09003 * 109.41068 * 179.20065 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 3.2525 -3.4134 -1.0109 12 6 4.1191 -4.6362 -1.1145 13 8 5.1966 -4.5400 -1.6629 14 7 3.7515 -5.8277 -0.6267 15 6 2.4954 -6.0277 0.0845 16 1 2.7071 -6.0027 1.1534 17 6 1.8872 -7.3840 -0.2537 18 6 1.5032 -7.4307 -1.7337 19 6 0.4869 -6.3231 -2.0230 20 6 1.1206 -4.9658 -1.7170 21 6 1.5178 -4.8994 -0.2397 22 1 0.6312 -4.9818 0.3889 23 1 -0.4849 0.8400 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6245 -2.5571 0.8897 26 1 2.7883 -3.2169 -1.9774 27 1 3.8684 -2.5603 -0.7264 28 1 4.3433 -6.5860 -0.7513 29 1 2.6139 -8.1687 -0.0436 30 1 0.9980 -7.5439 0.3560 31 1 2.3922 -7.2786 -2.3458 32 1 1.0628 -8.4005 -1.9654 33 1 0.1963 -6.3609 -3.0729 34 1 -0.3932 -6.4637 -1.3956 35 1 2.0072 -4.8318 -2.3369 36 1 0.4041 -4.1739 -1.9355 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132925665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:12 Heat of formation + Delta-G solvation = -38.893567 kcal Electronic energy + Delta-G solvation = -18046.405822 eV Core-core repulsion = 15336.809491 eV Total energy + Delta-G solvation = -2709.596331 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67461 -37.77784 -35.68500 -33.70871 -32.57116 -29.88851 -29.13972 -27.70638 -25.36361 -22.86292 -22.50058 -21.06342 -20.34423 -18.08559 -16.99583 -16.37324 -15.72488 -15.42888 -15.09528 -14.73543 -14.21322 -13.85595 -13.51733 -13.11304 -12.89879 -12.56647 -12.35108 -11.98348 -11.86898 -11.54057 -11.22355 -11.03685 -10.91056 -10.75013 -10.48019 -10.44864 -10.09306 -9.91284 -9.33517 -9.13831 -8.72177 -8.53955 -7.41013 -6.12143 -4.14502 3.06091 3.27995 3.36023 3.41387 3.63071 4.34368 4.55437 4.73245 4.81467 5.03014 5.18198 5.23016 5.26413 5.30982 5.49012 5.52777 5.66824 5.77804 5.85218 5.97496 6.04234 6.13244 6.17360 6.30882 6.35173 6.42995 6.53436 7.04575 7.17039 7.26858 7.59320 7.68758 7.82546 8.01337 8.37118 8.61767 8.92386 9.51180 10.98734 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032301 B = 0.007591 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.635228 B = 3687.731364 C = 4208.227251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.066 0.934 9 C 0.190 3.810 10 N -0.525 5.525 11 C 0.046 3.954 12 C 0.525 3.475 13 O -0.569 6.569 14 N -0.712 5.712 15 C 0.151 3.849 16 H 0.073 0.927 17 C -0.126 4.126 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.156 4.156 21 C 0.070 3.930 22 H 0.097 0.903 23 H 0.262 0.738 24 H 0.000 1.000 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.119 0.881 28 H 0.390 0.610 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 -14.003 -1.311 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.065 3.935 10 N -0.250 5.250 11 C -0.084 4.084 12 C 0.314 3.686 13 O -0.448 6.448 14 N -0.365 5.365 15 C 0.045 3.955 16 H 0.091 0.909 17 C -0.165 4.165 18 C -0.156 4.156 19 C -0.152 4.152 20 C -0.195 4.195 21 C -0.040 4.040 22 H 0.115 0.885 23 H 0.072 0.928 24 H 0.018 0.982 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.136 0.864 28 H 0.225 0.775 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.719 -13.617 -1.069 13.677 hybrid contribution 0.066 0.692 -0.775 1.041 sum 0.785 -12.925 -1.844 13.079 Atomic orbital electron populations 1.69958 1.06059 1.26872 1.50405 1.24967 0.94863 0.99394 0.94986 0.86456 0.80227 0.83312 0.77594 1.19517 1.21007 1.20909 1.21297 0.93548 0.90114 1.51137 0.91551 1.19838 0.90291 0.86626 0.96745 1.63085 1.13955 1.02655 1.45288 1.22176 0.94599 0.94962 0.96672 1.20749 0.86735 0.85014 0.76137 1.90691 1.23508 1.85547 1.45061 1.45629 1.21601 1.10925 1.58302 1.20776 0.83925 0.94530 0.96230 0.90891 1.21745 1.01239 0.96135 0.97365 1.21521 0.99443 0.98481 0.96143 1.21469 0.98117 0.94566 1.01037 1.22271 1.01391 0.97724 0.98080 1.22083 0.96126 0.90601 0.95185 0.88521 0.92847 0.98179 0.94470 0.91259 0.86372 0.77469 0.91581 0.90251 0.92050 0.92129 0.92317 0.91822 0.91941 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.06 8.51 -34.44 -0.29 -14.35 16 8 H 0.07 1.78 5.88 -52.49 -0.31 1.47 16 9 C 0.19 4.61 4.87 -4.98 -0.02 4.59 16 10 N -0.53 -10.62 4.84 -229.33 -1.11 -11.73 16 11 C 0.05 0.94 4.26 -5.20 -0.02 0.92 16 12 C 0.53 9.86 6.87 -11.60 -0.08 9.78 16 13 O -0.57 -12.35 17.83 5.55 0.10 -12.25 16 14 N -0.71 -10.53 4.70 -55.07 -0.26 -10.79 16 15 C 0.15 2.00 3.12 -68.75 -0.21 1.78 16 16 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 17 C -0.13 -1.25 5.55 -27.03 -0.15 -1.40 16 18 C -0.12 -1.23 5.84 -26.71 -0.16 -1.38 16 19 C -0.11 -1.35 5.92 -26.74 -0.16 -1.51 16 20 C -0.16 -2.38 4.26 -26.73 -0.11 -2.50 16 21 C 0.07 1.11 2.40 -67.40 -0.16 0.95 16 22 H 0.10 1.50 8.08 -51.93 -0.42 1.08 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.00 0.01 6.50 -51.93 -0.34 -0.33 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.43 6.59 -51.93 -0.34 1.08 16 27 H 0.12 2.62 6.14 -51.93 -0.32 2.30 16 28 H 0.39 5.04 8.75 -40.82 -0.36 4.68 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.70 7.85 -51.93 -0.41 0.30 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.03 5.34 -51.93 -0.28 0.75 16 36 H 0.07 1.28 6.73 -51.93 -0.35 0.93 16 LS Contribution 275.72 15.07 4.15 4.15 Total: -1.00 -30.04 275.72 -8.08 -38.13 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.21 Total: 2.68 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.47 Total: -1.56 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.63 Total: -47.39 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.10 Total: -12.25 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.04 -8.08 -38.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132925665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.768 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds