Wall clock time and date at job start Sun Mar 29 2020 23:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00439 * 2 1 4 4 H 1.48500 * 109.47433 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47071 * 300.00267 * 3 2 1 6 6 H 1.48501 * 109.47076 * 60.00228 * 3 2 1 7 7 C 1.37886 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99952 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99947 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46976 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00100 * 312.54925 * 10 9 7 12 12 C 1.50235 * 110.26809 * 186.93591 * 11 10 9 13 13 O 1.21284 * 118.62842 * 196.58914 * 12 11 10 14 14 N 1.33901 * 122.73828 * 16.58647 * 12 11 10 15 15 C 1.45728 * 122.45233 * 357.99803 * 14 12 11 16 16 H 1.08994 * 107.93809 * 261.53067 * 15 14 12 17 17 C 1.52436 * 110.95903 * 142.89781 * 15 14 12 18 18 C 1.52972 * 109.99852 * 295.22312 * 17 15 14 19 19 C 1.53078 * 109.11117 * 300.36896 * 18 17 15 20 20 C 1.52897 * 109.22815 * 60.99328 * 19 18 17 21 21 C 1.47567 * 111.00011 * 189.99872 * 10 9 7 22 22 H 1.08999 * 110.57083 * 313.07970 * 21 10 9 23 23 H 0.96996 * 119.99603 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46859 * 60.00077 * 9 7 2 25 25 H 1.09004 * 109.47487 * 300.00435 * 9 7 2 26 26 H 1.09004 * 109.33417 * 307.18151 * 11 10 9 27 27 H 1.08993 * 109.33553 * 66.84927 * 11 10 9 28 28 H 0.96991 * 118.77324 * 177.99713 * 14 12 11 29 29 H 1.09000 * 109.37777 * 55.38124 * 17 15 14 30 30 H 1.08993 * 109.38065 * 175.05719 * 17 15 14 31 31 H 1.08996 * 109.53062 * 60.26725 * 18 17 15 32 32 H 1.09006 * 109.52792 * 180.41008 * 18 17 15 33 33 H 1.09001 * 109.51098 * 180.91913 * 19 18 17 34 34 H 1.08990 * 109.51323 * 301.06820 * 19 18 17 35 35 H 1.09007 * 109.41100 * 59.42254 * 20 19 18 36 36 H 1.09003 * 109.41068 * 179.20065 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 3.2525 -3.4134 -1.0109 12 6 4.1191 -4.6362 -1.1145 13 8 5.1966 -4.5400 -1.6629 14 7 3.7515 -5.8277 -0.6267 15 6 2.4954 -6.0277 0.0845 16 1 2.7071 -6.0027 1.1534 17 6 1.8872 -7.3840 -0.2537 18 6 1.5032 -7.4307 -1.7337 19 6 0.4869 -6.3231 -2.0230 20 6 1.1206 -4.9658 -1.7170 21 6 1.5178 -4.8994 -0.2397 22 1 0.6312 -4.9818 0.3889 23 1 -0.4849 0.8400 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6245 -2.5571 0.8897 26 1 2.7883 -3.2169 -1.9774 27 1 3.8684 -2.5603 -0.7264 28 1 4.3433 -6.5860 -0.7513 29 1 2.6139 -8.1687 -0.0436 30 1 0.9980 -7.5439 0.3560 31 1 2.3922 -7.2786 -2.3458 32 1 1.0628 -8.4005 -1.9654 33 1 0.1963 -6.3609 -3.0729 34 1 -0.3932 -6.4637 -1.3956 35 1 2.0072 -4.8318 -2.3369 36 1 0.4041 -4.1739 -1.9355 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132925665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:11 Heat of formation + Delta-G solvation = -61.116293 kcal Electronic energy + Delta-G solvation = -18047.369472 eV Core-core repulsion = 15336.809491 eV Total energy + Delta-G solvation = -2710.559981 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.05763 -39.21672 -37.18820 -34.97848 -34.57254 -31.08716 -30.48225 -29.49978 -27.09155 -24.29508 -23.71821 -22.69581 -21.46907 -19.48055 -18.81506 -17.84134 -17.15257 -16.78116 -16.69518 -16.51689 -15.50648 -15.38312 -14.78373 -14.63308 -14.35740 -13.88092 -13.73809 -13.51758 -13.31882 -13.02418 -12.83909 -12.73853 -12.52140 -12.09032 -12.02119 -11.54540 -11.52397 -11.29426 -11.16759 -10.77497 -10.65018 -10.00572 -9.10562 -8.24614 -6.33498 1.38789 1.40729 1.52209 1.53178 2.31580 2.38337 3.02119 3.11791 3.57690 3.66177 3.84372 4.02367 4.15063 4.24364 4.35149 4.40165 4.50633 4.60288 4.66567 4.76989 4.91580 5.05940 5.13261 5.16185 5.18626 5.29518 5.30246 5.41790 5.48531 5.57024 5.83464 5.95798 6.07788 6.23708 6.50333 6.81395 7.19189 7.36418 8.86778 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032301 B = 0.007591 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.635228 B = 3687.731364 C = 4208.227251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.529 5.529 11 C 0.052 3.948 12 C 0.530 3.470 13 O -0.601 6.601 14 N -0.692 5.692 15 C 0.152 3.848 16 H 0.082 0.918 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.109 4.109 20 C -0.150 4.150 21 C 0.063 3.937 22 H 0.104 0.896 23 H 0.265 0.735 24 H -0.020 1.020 25 H 0.016 0.984 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.406 0.594 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.415 -16.086 -0.888 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.254 5.254 11 C -0.078 4.078 12 C 0.318 3.682 13 O -0.483 6.483 14 N -0.344 5.344 15 C 0.048 3.952 16 H 0.099 0.901 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.189 4.189 21 C -0.046 4.046 22 H 0.122 0.878 23 H 0.074 0.926 24 H -0.002 1.002 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.244 0.756 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.896 -15.755 -0.630 15.793 hybrid contribution -0.046 1.297 -0.896 1.577 sum 0.850 -14.458 -1.526 14.563 Atomic orbital electron populations 1.70057 1.07402 1.27857 1.51267 1.25778 0.95687 1.02781 0.94616 0.85462 0.78939 0.79204 0.77837 1.19244 1.20438 1.20157 1.21632 0.93646 0.91542 1.50842 0.91929 1.19443 0.90248 0.87590 0.94635 1.62958 1.13536 1.03298 1.45605 1.21964 0.94399 0.95495 0.95990 1.20306 0.85884 0.85619 0.76435 1.90676 1.24616 1.86144 1.46873 1.45472 1.22293 1.09953 1.56660 1.20956 0.82456 0.95414 0.96409 0.90056 1.21758 1.02550 0.93980 0.97275 1.21521 0.98516 0.98934 0.96270 1.21468 0.98866 0.92727 1.01695 1.22167 1.00168 0.99337 0.97201 1.22298 0.97103 0.89294 0.95861 0.87841 0.92590 1.00194 0.96595 0.92392 0.88883 0.75629 0.88797 0.88179 0.93181 0.89323 0.91861 0.90527 0.93572 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16 2 C 0.01 0.59 5.46 84.66 0.46 1.05 16 3 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.54 -29.89 8.51 25.60 0.22 -29.68 16 8 H 0.06 3.46 5.88 -2.91 -0.02 3.44 16 9 C 0.21 10.47 4.87 85.56 0.42 10.88 16 10 N -0.53 -21.88 4.84 -879.48 -4.25 -26.13 16 11 C 0.05 2.19 4.26 85.41 0.36 2.56 16 12 C 0.53 19.84 6.87 87.65 0.60 20.44 16 13 O -0.60 -26.14 17.83 -3.04 -0.05 -26.20 16 14 N -0.69 -19.10 4.70 -447.04 -2.10 -21.19 16 15 C 0.15 3.62 3.12 44.87 0.14 3.76 16 16 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 17 C -0.12 -1.78 5.55 30.40 0.17 -1.61 16 18 C -0.11 -1.93 5.84 30.61 0.18 -1.75 16 19 C -0.11 -2.35 5.92 30.59 0.18 -2.17 16 20 C -0.15 -4.58 4.26 30.60 0.13 -4.45 16 21 C 0.06 1.98 2.40 44.75 0.11 2.08 16 22 H 0.10 3.11 8.08 -2.39 -0.02 3.09 16 23 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 24 H -0.02 -1.06 6.50 -2.39 -0.02 -1.07 16 25 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.06 2.53 6.59 -2.38 -0.02 2.52 16 27 H 0.09 4.33 6.14 -2.39 -0.01 4.32 16 28 H 0.41 9.27 8.75 -92.71 -0.81 8.46 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 0.98 7.85 -2.39 -0.02 0.96 16 32 H 0.09 1.09 8.14 -2.38 -0.02 1.08 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.55 5.34 -2.38 -0.01 1.53 16 36 H 0.04 1.60 6.73 -2.39 -0.02 1.58 16 Total: -1.00 -66.63 275.72 -0.85 -67.49 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.27 Total: 12.57 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 2.97 Total: 1.13 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -6.07 Total: -101.23 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.05 Total: -26.20 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.63 -0.85 -67.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132925665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.370 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds