Wall clock time and date at job start Sun Mar 29 2020 23:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99906 * 2 1 4 4 H 1.48501 * 109.47035 * 270.00007 * 3 2 1 5 5 H 1.48497 * 109.47234 * 30.00073 * 3 2 1 6 6 H 1.48500 * 109.47210 * 150.00057 * 3 2 1 7 7 C 1.37878 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00232 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99695 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46985 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00569 * 293.95651 * 10 9 7 12 12 C 1.50236 * 110.27395 * 286.67600 * 11 10 9 13 13 O 1.21279 * 118.63039 * 163.44205 * 12 11 10 14 14 N 1.33905 * 122.74059 * 343.41673 * 12 11 10 15 15 C 1.45728 * 122.44756 * 2.03956 * 14 12 11 16 16 H 1.09001 * 108.39314 * 98.13381 * 15 14 12 17 17 C 1.52427 * 110.96486 * 217.06581 * 15 14 12 18 18 C 1.52972 * 109.99695 * 64.74004 * 17 15 14 19 19 C 1.53076 * 109.17839 * 59.57826 * 18 17 15 20 20 C 1.52894 * 109.23862 * 299.13442 * 19 18 17 21 21 C 1.47558 * 111.00321 * 171.40523 * 10 9 7 22 22 H 1.09004 * 110.02047 * 293.60678 * 21 10 9 23 23 H 0.97004 * 119.99929 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47047 * 59.99592 * 9 7 2 25 25 H 1.09000 * 109.47037 * 299.99163 * 9 7 2 26 26 H 1.09001 * 109.34375 * 166.43035 * 11 10 9 27 27 H 1.08997 * 109.33716 * 46.91496 * 11 10 9 28 28 H 0.97000 * 118.77362 * 182.02161 * 14 12 11 29 29 H 1.09001 * 109.38479 * 304.58176 * 17 15 14 30 30 H 1.08997 * 109.29809 * 184.84736 * 17 15 14 31 31 H 1.09002 * 109.53139 * 179.50803 * 18 17 15 32 32 H 1.08998 * 109.53034 * 299.65036 * 18 17 15 33 33 H 1.08998 * 109.51283 * 58.99142 * 19 18 17 34 34 H 1.09003 * 109.51034 * 179.13947 * 19 18 17 35 35 H 1.08995 * 109.35671 * 300.47462 * 20 19 18 36 36 H 1.09000 * 109.41687 * 180.71733 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9711 -3.6540 -1.2527 12 6 2.1040 -4.1442 -2.3774 13 8 2.4693 -3.9538 -3.5181 14 7 0.9450 -4.7829 -2.1730 15 6 0.4064 -5.0177 -0.8394 16 1 -0.3362 -4.2483 -0.6280 17 6 -0.2745 -6.3791 -0.7583 18 6 0.7555 -7.4920 -0.9597 19 6 1.8289 -7.3863 0.1266 20 6 2.5296 -6.0322 0.0124 21 6 1.5141 -4.9028 0.2064 22 1 1.0865 -4.9406 1.2084 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6242 -2.5567 0.8904 26 1 3.8228 -4.3241 -1.1352 27 1 3.3324 -2.6524 -1.4857 28 1 0.4453 -5.1008 -2.9412 29 1 -1.0381 -6.4484 -1.5330 30 1 -0.7410 -6.4907 0.2205 31 1 0.2623 -8.4617 -0.8915 32 1 1.2184 -7.3868 -1.9408 33 1 1.3631 -7.4723 1.1083 34 1 2.5577 -8.1865 -0.0028 35 1 2.9860 -5.9436 -0.9734 36 1 3.3033 -5.9590 0.7766 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132925906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:15 Heat of formation + Delta-G solvation = -38.401879 kcal Electronic energy + Delta-G solvation = -18213.464418 eV Core-core repulsion = 15503.889408 eV Total energy + Delta-G solvation = -2709.575010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.82479 -37.66102 -35.47444 -33.52341 -32.61410 -30.12810 -29.10234 -27.64105 -25.23872 -22.84810 -22.16811 -21.57365 -20.22186 -18.10393 -16.81293 -16.19906 -15.67990 -15.53828 -15.30762 -14.60606 -14.08645 -13.88350 -13.53575 -13.16552 -12.88853 -12.66498 -12.23993 -12.02911 -11.75173 -11.45443 -11.09636 -10.92210 -10.88918 -10.64616 -10.39484 -10.29262 -10.19529 -9.86063 -9.75372 -9.24750 -8.61985 -8.47542 -7.38314 -6.08068 -4.09864 3.15840 3.31773 3.37740 3.41427 3.67589 4.37349 4.58527 4.77142 4.84459 5.05684 5.13891 5.24986 5.28020 5.35671 5.47244 5.56741 5.67777 5.75876 5.82922 5.94319 6.02343 6.12102 6.19775 6.24638 6.35963 6.39206 6.47690 7.04535 7.13609 7.26224 7.65688 7.74318 7.86693 8.02865 8.39258 8.69721 8.96292 9.54900 11.02646 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034623 B = 0.007607 C = 0.007298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.506114 B = 3679.963103 C = 3835.857203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.185 3.815 10 N -0.519 5.519 11 C 0.043 3.957 12 C 0.500 3.500 13 O -0.569 6.569 14 N -0.712 5.712 15 C 0.107 3.893 16 H 0.077 0.923 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.116 4.116 20 C -0.118 4.118 21 C 0.073 3.927 22 H 0.098 0.902 23 H 0.262 0.738 24 H 0.001 0.999 25 H 0.034 0.966 26 H 0.095 0.905 27 H 0.119 0.881 28 H 0.389 0.611 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -14.065 1.038 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.060 3.940 10 N -0.242 5.242 11 C -0.088 4.088 12 C 0.287 3.713 13 O -0.448 6.448 14 N -0.364 5.364 15 C 0.000 4.000 16 H 0.095 0.905 17 C -0.162 4.162 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.036 4.036 22 H 0.116 0.884 23 H 0.071 0.929 24 H 0.019 0.981 25 H 0.052 0.948 26 H 0.113 0.887 27 H 0.137 0.863 28 H 0.224 0.776 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.859 -13.640 1.061 13.708 hybrid contribution -0.634 0.744 -0.949 1.362 sum 0.225 -12.896 0.112 12.899 Atomic orbital electron populations 1.69944 1.06083 1.26921 1.50627 1.24968 0.94887 0.99399 0.95141 0.86485 0.79827 0.82936 0.78158 1.20647 1.21221 1.19648 1.21125 0.93560 0.89838 1.50669 0.91698 1.19893 0.90324 0.87166 0.96627 1.62989 1.27599 1.02471 1.31149 1.22399 0.96110 1.04251 0.86079 1.21564 0.81695 0.76135 0.91908 1.90668 1.72159 1.57572 1.24392 1.45582 1.23304 1.58907 1.08592 1.21462 0.97741 0.97230 0.83577 0.90511 1.21701 0.97869 0.93957 1.02689 1.21520 0.96742 0.97858 0.99472 1.21505 0.97819 0.97119 0.98972 1.21713 0.98184 0.93282 1.02408 1.22167 0.92572 0.90877 0.98020 0.88378 0.92856 0.98139 0.94787 0.88723 0.86264 0.77550 0.91776 0.90359 0.92164 0.92037 0.91774 0.92096 0.91966 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.51 -14.11 8.32 -34.44 -0.29 -14.39 16 8 H 0.06 1.76 7.21 -52.49 -0.38 1.38 16 9 C 0.18 4.56 3.74 -4.98 -0.02 4.54 16 10 N -0.52 -10.43 4.91 -229.34 -1.13 -11.56 16 11 C 0.04 0.85 5.07 -5.20 -0.03 0.82 16 12 C 0.50 10.09 6.16 -11.60 -0.07 10.02 16 13 O -0.57 -13.26 17.83 5.56 0.10 -13.16 16 14 N -0.71 -12.06 4.52 -55.07 -0.25 -12.31 16 15 C 0.11 1.63 2.34 -68.75 -0.16 1.47 16 16 H 0.08 1.36 6.69 -51.93 -0.35 1.01 16 17 C -0.12 -1.40 5.56 -27.04 -0.15 -1.55 16 18 C -0.12 -1.24 5.83 -26.71 -0.16 -1.40 16 19 C -0.12 -1.23 5.93 -26.75 -0.16 -1.38 16 20 C -0.12 -1.56 4.55 -26.73 -0.12 -1.69 16 21 C 0.07 1.16 2.66 -67.41 -0.18 0.98 16 22 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 24 H 0.00 0.02 6.08 -51.93 -0.32 -0.29 16 25 H 0.03 0.89 8.10 -51.93 -0.42 0.47 16 26 H 0.09 1.61 6.63 -51.93 -0.34 1.27 16 27 H 0.12 2.63 6.60 -51.93 -0.34 2.29 16 28 H 0.39 6.04 8.75 -40.82 -0.36 5.69 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.72 7.85 -51.93 -0.41 0.31 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.90 5.33 -51.93 -0.28 0.62 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 275.57 15.07 4.15 4.15 Total: -1.00 -31.08 275.57 -8.12 -39.20 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.28 Total: 3.63 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.43 Total: -1.05 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.64 Total: -49.38 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.10 Total: -13.16 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.08 -8.12 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132925906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.799 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds