Wall clock time and date at job start Sun Mar 29 2020 23:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99906 * 2 1 4 4 H 1.48501 * 109.47035 * 270.00007 * 3 2 1 5 5 H 1.48497 * 109.47234 * 30.00073 * 3 2 1 6 6 H 1.48500 * 109.47210 * 150.00057 * 3 2 1 7 7 C 1.37878 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00232 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99695 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46985 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00569 * 293.95651 * 10 9 7 12 12 C 1.50236 * 110.27395 * 286.67600 * 11 10 9 13 13 O 1.21279 * 118.63039 * 163.44205 * 12 11 10 14 14 N 1.33905 * 122.74059 * 343.41673 * 12 11 10 15 15 C 1.45728 * 122.44756 * 2.03956 * 14 12 11 16 16 H 1.09001 * 108.39314 * 98.13381 * 15 14 12 17 17 C 1.52427 * 110.96486 * 217.06581 * 15 14 12 18 18 C 1.52972 * 109.99695 * 64.74004 * 17 15 14 19 19 C 1.53076 * 109.17839 * 59.57826 * 18 17 15 20 20 C 1.52894 * 109.23862 * 299.13442 * 19 18 17 21 21 C 1.47558 * 111.00321 * 171.40523 * 10 9 7 22 22 H 1.09004 * 110.02047 * 293.60678 * 21 10 9 23 23 H 0.97004 * 119.99929 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47047 * 59.99592 * 9 7 2 25 25 H 1.09000 * 109.47037 * 299.99163 * 9 7 2 26 26 H 1.09001 * 109.34375 * 166.43035 * 11 10 9 27 27 H 1.08997 * 109.33716 * 46.91496 * 11 10 9 28 28 H 0.97000 * 118.77362 * 182.02161 * 14 12 11 29 29 H 1.09001 * 109.38479 * 304.58176 * 17 15 14 30 30 H 1.08997 * 109.29809 * 184.84736 * 17 15 14 31 31 H 1.09002 * 109.53139 * 179.50803 * 18 17 15 32 32 H 1.08998 * 109.53034 * 299.65036 * 18 17 15 33 33 H 1.08998 * 109.51283 * 58.99142 * 19 18 17 34 34 H 1.09003 * 109.51034 * 179.13947 * 19 18 17 35 35 H 1.08995 * 109.35671 * 300.47462 * 20 19 18 36 36 H 1.09000 * 109.41687 * 180.71733 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9711 -3.6540 -1.2527 12 6 2.1040 -4.1442 -2.3774 13 8 2.4693 -3.9538 -3.5181 14 7 0.9450 -4.7829 -2.1730 15 6 0.4064 -5.0177 -0.8394 16 1 -0.3362 -4.2483 -0.6280 17 6 -0.2745 -6.3791 -0.7583 18 6 0.7555 -7.4920 -0.9597 19 6 1.8289 -7.3863 0.1266 20 6 2.5296 -6.0322 0.0124 21 6 1.5141 -4.9028 0.2064 22 1 1.0865 -4.9406 1.2084 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6242 -2.5567 0.8904 26 1 3.8228 -4.3241 -1.1352 27 1 3.3324 -2.6524 -1.4857 28 1 0.4453 -5.1008 -2.9412 29 1 -1.0381 -6.4484 -1.5330 30 1 -0.7410 -6.4907 0.2205 31 1 0.2623 -8.4617 -0.8915 32 1 1.2184 -7.3868 -1.9408 33 1 1.3631 -7.4723 1.1083 34 1 2.5577 -8.1865 -0.0028 35 1 2.9860 -5.9436 -0.9734 36 1 3.3033 -5.9590 0.7766 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132925906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:15 Heat of formation + Delta-G solvation = -61.646872 kcal Electronic energy + Delta-G solvation = -18214.472396 eV Core-core repulsion = 15503.889408 eV Total energy + Delta-G solvation = -2710.582989 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.26271 -39.15480 -36.95260 -34.88404 -34.62330 -31.42131 -30.43942 -29.38332 -26.95059 -24.30297 -23.38840 -23.21542 -21.36528 -19.55698 -18.63501 -17.82523 -17.25688 -16.88610 -16.80761 -16.46944 -15.51554 -15.22876 -14.85717 -14.65421 -14.30708 -14.18367 -13.54186 -13.40953 -13.18370 -12.92963 -12.73530 -12.69194 -12.40565 -12.11936 -11.94395 -11.58641 -11.41871 -11.34829 -11.22482 -11.14421 -10.62241 -10.06075 -9.05265 -8.23242 -6.32192 1.39765 1.40806 1.51811 1.53377 2.23813 2.39008 3.08559 3.14459 3.54920 3.75902 3.84000 3.92204 4.20492 4.23353 4.32571 4.46081 4.50794 4.61551 4.68003 4.85196 4.91975 5.02274 5.10937 5.19794 5.20461 5.25650 5.30545 5.38527 5.51727 5.61299 5.75805 5.98377 6.11452 6.23741 6.49407 6.81948 7.13945 7.37071 8.87220 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034623 B = 0.007607 C = 0.007298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.506114 B = 3679.963103 C = 3835.857203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.204 3.796 10 N -0.523 5.523 11 C 0.047 3.953 12 C 0.496 3.504 13 O -0.607 6.607 14 N -0.699 5.699 15 C 0.108 3.892 16 H 0.047 0.953 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.111 4.111 20 C -0.111 4.111 21 C 0.068 3.932 22 H 0.106 0.894 23 H 0.264 0.736 24 H -0.026 1.026 25 H 0.014 0.986 26 H 0.125 0.875 27 H 0.091 0.909 28 H 0.398 0.602 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.680 -15.748 1.771 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.081 0.919 9 C 0.078 3.922 10 N -0.245 5.245 11 C -0.084 4.084 12 C 0.283 3.717 13 O -0.489 6.489 14 N -0.350 5.350 15 C 0.001 3.999 16 H 0.065 0.935 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.040 4.040 22 H 0.124 0.876 23 H 0.073 0.927 24 H -0.008 1.008 25 H 0.032 0.968 26 H 0.142 0.858 27 H 0.109 0.891 28 H 0.234 0.766 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.171 -15.362 1.818 15.514 hybrid contribution -0.771 1.222 -1.154 1.849 sum 0.401 -14.140 0.664 14.162 Atomic orbital electron populations 1.70056 1.07521 1.27824 1.51627 1.25832 0.95743 1.02995 0.94806 0.85472 0.78911 0.78702 0.78126 1.20582 1.20497 1.18576 1.21517 0.93760 0.91350 1.50206 0.91863 1.19464 0.90192 0.88251 0.94278 1.62879 1.27053 1.03350 1.31252 1.22333 0.96916 1.03396 0.85786 1.21642 0.82550 0.76164 0.91354 1.90642 1.73391 1.59304 1.25555 1.45537 1.22183 1.57460 1.09853 1.21541 0.96884 0.99136 0.82301 0.93491 1.21688 0.98104 0.91390 1.04211 1.21519 0.96410 0.98537 0.98763 1.21506 0.98082 0.95473 0.99807 1.21675 0.97663 0.93760 1.01809 1.22380 0.93447 0.89601 0.98596 0.87577 0.92740 1.00840 0.96768 0.85765 0.89087 0.76620 0.90662 0.88532 0.89504 0.93295 0.90252 0.90341 0.93250 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.53 -29.76 8.32 25.60 0.21 -29.55 16 8 H 0.06 3.49 7.21 -2.91 -0.02 3.47 16 9 C 0.20 10.39 3.74 85.56 0.32 10.71 16 10 N -0.52 -21.13 4.91 -879.50 -4.32 -25.45 16 11 C 0.05 1.87 5.07 85.41 0.43 2.30 16 12 C 0.50 20.27 6.16 87.65 0.54 20.81 16 13 O -0.61 -28.82 17.83 -3.03 -0.05 -28.88 16 14 N -0.70 -23.65 4.52 -447.04 -2.02 -25.67 16 15 C 0.11 3.21 2.34 44.87 0.11 3.31 16 16 H 0.05 1.70 6.69 -2.39 -0.02 1.69 16 17 C -0.12 -2.30 5.56 30.40 0.17 -2.14 16 18 C -0.11 -1.98 5.83 30.61 0.18 -1.81 16 19 C -0.11 -1.91 5.93 30.58 0.18 -1.73 16 20 C -0.11 -2.68 4.55 30.60 0.14 -2.54 16 21 C 0.07 2.10 2.66 44.75 0.12 2.22 16 22 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 24 H -0.03 -1.45 6.08 -2.39 -0.01 -1.46 16 25 H 0.01 0.77 8.10 -2.39 -0.02 0.75 16 26 H 0.12 4.15 6.63 -2.39 -0.02 4.14 16 27 H 0.09 4.16 6.60 -2.39 -0.02 4.14 16 28 H 0.40 12.21 8.75 -92.71 -0.81 11.40 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.99 7.85 -2.39 -0.02 0.97 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.33 5.33 -2.39 -0.01 1.32 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -68.43 275.57 -0.95 -69.38 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.27 Total: 16.79 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 2.86 Total: 2.32 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -6.05 Total: -106.40 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.05 Total: -28.88 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.43 -0.95 -69.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132925906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.736 kcal (2) G-P(sol) polarization free energy of solvation -68.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds